DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_GEOMG (Uroporphyrinogen decarboxylase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.127e-50
Identity = 105/246 (42.68%), Postives = 154/246 (62.60%), Query Frame = 1
Query:   13 GPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTV-RKAGRWKHILNLGHGIKVGTPEENVAHFFE 747
            GPV   P+ T A+V+++R  +PEE VPYV   + ILR+E+     ++GF GAPFTLA Y+VEG  SK ++ IKR+ ++ P+V  AL+ K T    +Y+  Q   GAQA+QIFD+W   LSP D+E+F LPY +++++ + +   +  +I +  G+G +LE +   G DV+ LDW V++ + R  LGP++AVQGN+DP  L+  K+ I   +   +   AGR  HI NLGHGI    P EN  H  E
Sbjct:   89 GPVFETPVRTMADVERLRIPNPEEDVPYVLDTIKILRKELAGRVPLIGFGGAPFTLACYMVEGKGSKDWATIKRMMYAAPEVYAALMDKVTMMDMEYLNAQIRAGAQAIQIFDTWGGVLSPTDYEKFVLPYTRKLINGLNR--QNTPVIHFVKGAGTMLETVQKAGGDVMGLDWHVNLGKARDVLGPNMAVQGNLDPTVLYAPKEVIEVEVKRVLDENAGRPGHIFNLGHGILPTVPPENAIHMVE 332          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ALISL (Uroporphyrinogen decarboxylase OS=Aliivibrio salmonicida (strain LFI1238) GN=hemE PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.281e-50
Identity = 97/251 (38.65%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR--WKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P +LH LL K   ++ +Y+  Q   GAQ+V +FD+W   L+P D+ EFSL Y+ +IVD + + +    + + L+    G  LE++A TG D + LDWT+++A+ ++R+G  VA+QGN+DP  L+   + I   ++  +   G     H+ NLGHGI +  P EN   F +
Sbjct:   94 GEGPKFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPAILHLLLDKLADTVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNEFSLRYMHKIVDALIRENEGRRVPVTLFTKNGGMWLEQIAATGCDAIGLDWTINIADAKKRIGDKVALQGNMDPSILYAQPERIRQEVSTILEGFGNEGTGHVFNLGHGIHLDVPPENAGVFVD 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ACTPJ (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=hemE PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.281e-50
Identity = 102/250 (40.80%), Postives = 154/250 (61.60%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP--DLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ ++ P++LHALL K   S+  Y+  Q   GAQAV +FD+W   L+  +++ FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D V LDWT+D+A+ RRR+G  VA+QGN+DP  L+   + I   +   +   G+   H+ NLGHGI    PE++   F +
Sbjct:   94 GEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYADPQILHALLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHNEYKAFSLRYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTIDIADARRRVGHKVALQGNMDPSVLYAQPERIEQEVKQILAGFGQGSGHVFNLGHGIHQDVPEQSPKVFVD 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBPA (Uroporphyrinogen decarboxylase OS=Vibrio parahaemolyticus GN=hemE PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.592e-50
Identity = 100/251 (39.84%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GPV  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+  Y+  Q   GAQ+V +FD+W   L+P D+  FSL Y+ +IVD + + +    + + L+    G  LE++A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+ S + I   +   +   G     H+ NLGHGI +  P EN   F E
Sbjct:   94 GEGPVFDNPITCKADVEKIGLPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPQTLHLLLDKLADSVIDYLNAQIKAGAQSVMVFDTWGGVLTPRDYNLFSLQYMHKIVDGLIRENDGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIADAKARIGDKVALQGNMDPSMLYASPERIREEVAGILEGFGDAGTGHVFNLGHGIHLDVPPENAGVFVE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBHB (Uroporphyrinogen decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemE PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.592e-50
Identity = 100/251 (39.84%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GPV   PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+  FSL Y+ +IVD + + +    + + L+    G  LE++A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+ S + I   +   +   G     H+ NLGHGI +  P EN   F E
Sbjct:   94 GEGPVFDKPITCKADVEKIGLPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPQTLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNLFSLQYMHKIVDGLIRENDGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIADAKARIGDKVALQGNMDPSMLYASPERIREEVAGILEGFGDAGTGHVFNLGHGIHLDVPPENAGVFVE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_PSEHT (Uroporphyrinogen decarboxylase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=hemE PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 98/248 (39.52%), Postives = 154/248 (62.10%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHF 741
            G+GP    PI++ ++V ++ + DP + + YV  A++ +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F KIK++AF++P+ LH LL K   S+  Y+  Q   GAQ++ +FDSW   LSP D+ EFSL Y+ +IVD + + +    + + L+    G  +E +A TG D + LDWT+++++ +RR+G  VA+QGN+DP  L G+ + I   +   +   G    H+ NLGHGI      EN   F
Sbjct:   94 GEGPKFERPISSLSDVKKIPKLDPNDDLGYVMNAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKVFGKIKKMAFAEPQTLHLLLDKLADSVIDYLNAQIKAGAQSLMVFDSWGGVLSPRDYNEFSLQYMHKIVDGLIREYDGRRVPVTLFTKNGGQWIEAIAATGCDAIGLDWTINISDAKRRVGDKVALQGNMDPSMLHGTPERIRQEVATILEDFGTGNGHVFNLGHGITPDVDPENAGVF 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_COLP3 (Uroporphyrinogen decarboxylase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=hemE PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 100/251 (39.84%), Postives = 151/251 (60.16%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP--DLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR--WKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD++   DPE+ + YV  A+  +R+E+  E  ++GF G+P+TLA+Y++EGGSSK F+KIK++ F++P+ LH LL K   S+  Y+  Q   GAQ+V +FD+W   LSP D+ EFSL Y+ +IVD + + +    + + L+    G  LE +A TG D V LDWT+D+   + R+G  VA+QGN+DP  L+     I   ++  +   G     H+ NLGHGI      ++  HF E
Sbjct:   94 GEGPKFERPITCKADVDKIAVPDPEDELGYVMNAVRTIRKELKGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMMFAEPQTLHLLLDKLADSVISYLNAQIAAGAQSVMVFDTWGGVLSPRDYNEFSLQYMAKIVDGLTRHNEGRQVPVTLFTKNGGMWLESIAATGCDAVGLDWTIDIENAKARVGDKVALQGNMDPSMLYAPLPRIEQEVSKILSGFGEGGTGHVFNLGHGIHPDVNPDHAGHFIE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_PSYIN (Uroporphyrinogen decarboxylase OS=Psychromonas ingrahamii (strain 37) GN=hemE PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.538e-50
Identity = 98/245 (40.00%), Postives = 152/245 (62.04%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH--PDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEEN 729
            +G+GP +  PI    +VD +   DPE  + YV  A+  +R E+     ++GF G+P+TLA+Y+VEGGSSK F+KIK++AF +P++LH LL K   S+  Y+  Q   GAQ+V +FD+W   LSP D+++FSL Y+ +IV  +++++    + + L+    G  LE +A TG D + LDWT+DMA  + R+G  V +QGN+DP  L+ + + I   +   +   G+   H+ NLGHGI +  P EN
Sbjct:   93 EGEGPKLKRPITCKKDVDNLIMPDPEGELQYVMNAVRTIRRELKGSVPLIGFAGSPWTLATYMVEGGSSKAFTKIKKMAFCEPQLLHTLLDKLADSVIDYLNAQIAAGAQSVMVFDTWGGVLSPRDYKDFSLQYMTKIVAGLQRSYEGQKIPVTLFTKNGGQWLEAIADTGCDAIGLDWTIDMASAKARVGDRVVLQGNMDPSMLYATPERIRQEVATILASFGKGNGHVFNLGHGIHLDVPPEN 337          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ERWCT (Uroporphyrinogen decarboxylase OS=Erwinia carotovora subsp. atroseptica GN=hemE PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.246e-49
Identity = 103/250 (41.20%), Postives = 154/250 (61.60%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI + A+V ++   DPE+ + YV  A+  +R+ +  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ F++PK LH LL K   S+  Y+  Q   GAQAV +FD+W   LS  D++EFSL Y+ +IVD++++ +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G+   H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFHSPITSHADVVKLPVPDPEQELGYVMNAVRTIRKNLAGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMFAEPKTLHLLLDKLADSVILYLNAQIRAGAQAVMVFDTWGGALSGRDYKEFSLHYMHKIVDSLQRENEGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTSDIADARRRVGDKVALQGNMDPSMLYADPARIEQEVASILAGFGQGNGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHELP (Uroporphyrinogen decarboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=hemE PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.627e-49
Identity = 104/251 (41.43%), Postives = 154/251 (61.35%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD---LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P +T   + ++   DPE+ + YV KA++ +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F KIK++A+++P  LH LL K   ++  Y+  Q  NGAQ++ IFDSW   LS   + EFSL Y+++IVD + + H D   + + L+  G G  LE +A TG D + LDWTVD+A+ RRR+G  VA+QGN+DP  L+ S + I   +   +   G    H+ NLGHGI      E+   F +
Sbjct:   94 GEGPRFERPTDTLDAIKKLAVPDPEDELGYVMKAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEPAALHMLLDKLADAVTLYLNAQVANGAQSLMIFDSWGGALSHTAYREFSLRYMQKIVDGLTR-HADGRQVPVTLFTKGGGLWLEAMAETGCDALGLDWTVDIADARRRVGHKVALQGNMDPSMLYASPERIHEEVRQILAGYGEGSGHVFNLGHGIHQHVDPEHAGAFIK 343          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_GEOMG1.127e-5042.68Uroporphyrinogen decarboxylase OS=Geobacter metall... [more]
DCUP_ALISL4.281e-5038.65Uroporphyrinogen decarboxylase OS=Aliivibrio salmo... [more]
DCUP_ACTPJ4.281e-5040.80Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_VIBPA5.592e-5039.84Uroporphyrinogen decarboxylase OS=Vibrio parahaemo... [more]
DCUP_VIBHB5.592e-5039.84Uroporphyrinogen decarboxylase OS=Vibrio harveyi (... [more]
DCUP_PSEHT7.303e-5039.52Uroporphyrinogen decarboxylase OS=Pseudoalteromona... [more]
DCUP_COLP37.303e-5039.84Uroporphyrinogen decarboxylase OS=Colwellia psychr... [more]
DCUP_PSYIN9.538e-5040.00Uroporphyrinogen decarboxylase OS=Psychromonas ing... [more]
DCUP_ERWCT1.246e-4941.20Uroporphyrinogen decarboxylase OS=Erwinia carotovo... [more]
DCUP_SHELP1.627e-4941.43Uroporphyrinogen decarboxylase OS=Shewanella loihi... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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