DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_PHOPR (Uroporphyrinogen decarboxylase OS=Photobacterium profundum GN=hemE PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.627e-49
Identity = 99/251 (39.44%), Postives = 154/251 (61.35%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P  LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+ EFSL Y+ +IVD + + +    + + L+    G  LE++A TG D + LDWT+++A+  RR+G  VA+QGN+DP  L+   + I   +   +   G     H+ NLGHGI +  P EN   F +
Sbjct:   94 GEGPKFERPITCKADVDKIGLPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPATLHLLLDKLADSVVEYLNAQIKAGAQSVMVFDTWGGVLTPSDYNEFSLRYMHKIVDGLIRENDGHRVPVTLFTKNGGMWLEQIAATGCDAIGLDWTINIADANRRVGDKVALQGNMDPSILYAQPERIRQEVATILEGYGDEGTGHVFNLGHGIHLDVPPENAGVFVD 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO5E (Uroporphyrinogen decarboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.627e-49
Identity = 103/250 (41.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+A Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVALYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO57 (Uroporphyrinogen decarboxylase OS=Escherichia coli O157:H7 GN=hemE PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.627e-49
Identity = 103/250 (41.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+A Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVALYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ERWT9 (Uroporphyrinogen decarboxylase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 100/250 (40.00%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+V+++   DPE+ + YV  A+  +R+ +N E  ++GF G+P+TLA+Y+VEGGSSK F+K+K++ +++P+ LH +L K   S+  Y+  Q   GAQ+V IFD+W   L+  D+ EFSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+ S   I   +   +   G    H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFSSPVTCRADVEKLPIPDPEQELGYVMNAVRTIRKNLNGEVPLIGFSGSPWTLATYMVEGGSSKAFTKLKKMMYAEPQTLHLMLDKLADSVTLYLNAQIRAGAQSVMIFDTWGGVLTGRDYLEFSLNYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWTTDLADARRRVGDRVALQGNMDPSMLYASPARIEQEVAGILEGYGHGNGHVFNLGHGIHQDVPPEHAGAFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ENT38 (Uroporphyrinogen decarboxylase OS=Enterobacter sp. (strain 638) GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 100/250 (40.00%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI + A++D++   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ +++P  LHALL K   S+  Y+  Q   GAQ+V IFD+W   L+  D+++FSL Y+ +I+D + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G+ + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPIKSKADIDKLPIPDPEGELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYAEPMALHALLDKLAKSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRDYQQFSLYYMHKIIDGLLRENEGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWTTDIADARRRVGDTVALQGNMDPSMLYAQPARIEEEVASILAGFGQGEGHVFNLGHGIHQDVPPEHAGAFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECOUT (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain UTI89 / UPEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVASILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECOL6 (Uroporphyrinogen decarboxylase OS=Escherichia coli O6 GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVASILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECOK1 (Uroporphyrinogen decarboxylase OS=Escherichia coli O1:K1 / APEC GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVASILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO7I (Uroporphyrinogen decarboxylase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVASILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO45 (Uroporphyrinogen decarboxylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVASILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_PHOPR1.627e-4939.44Uroporphyrinogen decarboxylase OS=Photobacterium p... [more]
DCUP_ECO5E1.627e-4941.20Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECO571.627e-4941.20Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ERWT93.624e-4940.00Uroporphyrinogen decarboxylase OS=Erwinia tasmanie... [more]
DCUP_ENT383.624e-4940.00Uroporphyrinogen decarboxylase OS=Enterobacter sp.... [more]
DCUP_ECOUT3.624e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOL63.624e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOK13.624e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECO7I3.624e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECO453.624e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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