DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO27 (Uroporphyrinogen decarboxylase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVASILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBFM (Uroporphyrinogen decarboxylase OS=Vibrio fischeri (strain MJ11) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 99/251 (39.44%), Postives = 153/251 (60.96%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P  LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+ EFSL Y+ +IVD + + +    + + L+    G  LE +A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+   + I   +   +   G     H+ NLGHGI +  P EN   F +
Sbjct:   94 GEGPKFERPITCKADVDKIGLPDPEGELQYVMNAVRQIRKDLKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPATLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNEFSLRYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLESIAATGCDAVGLDWTINIADAKARIGDKVALQGNMDPSILYAQPERIRQEVGTILEGFGDAGTGHVFNLGHGIHLDVPPENAGVFVD 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBF1 (Uroporphyrinogen decarboxylase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 99/251 (39.44%), Postives = 153/251 (60.96%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P  LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+ EFSL Y+ +IVD + + +    + + L+    G  LE +A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+   + I   +   +   G     H+ NLGHGI +  P EN   F +
Sbjct:   94 GEGPKFERPITCKADVDKIGLPDPEGELQYVMNAVRQIRKDLKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPATLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNEFSLRYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLESIAATGCDAVGLDWTINIADAKARIGDKVALQGNMDPSILYAQPERIRQEVGTILEGFGDAGTGHVFNLGHGIHLDVPPENAGVFVD 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHISS (Uroporphyrinogen decarboxylase OS=Shigella sonnei (strain Ss046) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHIFL (Uroporphyrinogen decarboxylase OS=Shigella flexneri GN=hemE PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHIF8 (Uroporphyrinogen decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHIBS (Uroporphyrinogen decarboxylase OS=Shigella boydii serotype 4 (strain Sb227) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHIB3 (Uroporphyrinogen decarboxylase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHEPA (Uroporphyrinogen decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 103/249 (41.37%), Postives = 152/249 (61.04%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD---LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHF 741
            G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F KIK++A+ +P  LH LL K   S+  Y+  Q  NGAQ++ IFDSW   LS   + EFSL Y+++IVD + + H D   + + L+  G G  LE +A TG D + LDWTVD+ + RRR+G  VA+QGN+DP  L+G+ + I   ++  +   G    H+ NLGHGI      E    F
Sbjct:   94 GEGPRFERPTDTIDSIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFEKIKKMAYEEPATLHMLLDKLADSVTLYLNAQVANGAQSLMIFDSWGGALSHHAYREFSLRYMQKIVDGLTR-HADGRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGHKVALQGNMDPSVLYGTPERIHQEVDQILASYGEGTGHVFNLGHGIHQHVDPERAGSF 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHEHH (Uroporphyrinogen decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 103/249 (41.37%), Postives = 152/249 (61.04%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD---LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHF 741
            G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F KIK++A+ +P  LH LL K   S+  Y+  Q  NGAQ++ IFDSW   LS   + EFSL Y+++IVD + + H D   + + L+  G G  LE +A TG D + LDWTVD+ + RRR+G  VA+QGN+DP  L+G+ + I   ++  +   G    H+ NLGHGI      E    F
Sbjct:   94 GEGPRFERPTDTIDSIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFEKIKKMAYEEPATLHMLLDKLADSVTLYLNAQVANGAQSLMIFDSWGGALSHHAYREFSLRYMQKIVDGLTR-HADGRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGHKVALQGNMDPSVLYGTPERIHQEVDQILSSYGEGTGHVFNLGHGIHQHVDPERAGSF 341          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_ECO273.624e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_VIBFM4.734e-4939.44Uroporphyrinogen decarboxylase OS=Vibrio fischeri ... [more]
DCUP_VIBF14.734e-4939.44Uroporphyrinogen decarboxylase OS=Vibrio fischeri ... [more]
DCUP_SHISS4.734e-4940.80Uroporphyrinogen decarboxylase OS=Shigella sonnei ... [more]
DCUP_SHIFL4.734e-4940.80Uroporphyrinogen decarboxylase OS=Shigella flexner... [more]
DCUP_SHIF84.734e-4940.80Uroporphyrinogen decarboxylase OS=Shigella flexner... [more]
DCUP_SHIBS4.734e-4940.80Uroporphyrinogen decarboxylase OS=Shigella boydii ... [more]
DCUP_SHIB34.734e-4940.80Uroporphyrinogen decarboxylase OS=Shigella boydii ... [more]
DCUP_SHEPA4.734e-4941.37Uroporphyrinogen decarboxylase OS=Shewanella peale... [more]
DCUP_SHEHH4.734e-4941.37Uroporphyrinogen decarboxylase OS=Shewanella halif... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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