DC900214

Overview
NameDC900214
Unique NameDC900214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900214_ssr416 microsatellite DC900214_ssr416:416..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4248 contig Csv1_Contig4248:245..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900214 vs. ExPASy Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 2
Query:    2 PDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 292
            PD PSPS P +RE++HW+V DIP  T    G EI+ Y  P P  GIHR + +LF+Q   LG   V  P  R NFNTR FA   +LGLPVA +++NCQ+E
Sbjct:   72 PDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQ---LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167          
BLAST of DC900214 vs. ExPASy Swiss-Prot
Match: D1_ONCVO (Protein D1 (Fragment) OS=Onchocerca volvulus GN=D1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    2 PDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 292
            PDAPS   P  REW HW++++I  G N + G  +  Y+G  PP   G+HRY+ ++++Q   +   +    R NF    FA    LG PVA  +F  + E
Sbjct:   54 PDAPSRKNPVFREWHHWLIINI-SGQNVSSGTVLSDYIGSGPPKGTGLHRYVFLVYKQPGSITDTQHGGNRPNFKVMDFANKHHLGNPVAGNFFQAKHE 151          
BLAST of DC900214 vs. ExPASy Swiss-Prot
Match: OV16_ONCVO (OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    2 PDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMG--PRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 292
            PDAPS   P  REW HW++++I  G N + G  +  Y+G  PR   G+HRY+ ++++Q   +   +    R NF    FA    LG PVA  +F  + E
Sbjct:   99 PDAPSRKNPVFREWHHWLIINI-SGQNVSSGTVLSDYIGSGPRKGTGLHRYVFLVYKQPGSITDTQHGGNRRNFKVMDFANKHHLGNPVAGNFFQAKHE 196          
BLAST of DC900214 vs. ExPASy Swiss-Prot
Match: D2_ONCVO (Protein D2 (Fragment) OS=Onchocerca volvulus GN=D2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 35/99 (35.35%), Postives = 52/99 (52.53%), Query Frame = 2
Query:    2 PDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 292
            PD PS   P  REW HW++++I  G N + G  +  Y+G  PP   G+HRY+ ++++Q   +   +    R NF    FA    LG PVA  +F  + E
Sbjct:   16 PDVPSRKNPVFREWHHWLIINI-SGQNVSSGTVLSDYIGSGPPKGTGLHRYVFLVYKQPGSITDTQHGGNRRNFKVMDFANKHHLGNPVAGNFFQAKHE 113          
BLAST of DC900214 vs. ExPASy Swiss-Prot
Match: D3_ONCVO (Protein D3 (Fragment) OS=Onchocerca volvulus GN=D3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 35/99 (35.35%), Postives = 52/99 (52.53%), Query Frame = 2
Query:    2 PDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 292
            PDAPS   P  REW HW++++I  G N + G  +  Y+G   P   G+HRY+ ++++Q   +   +    R NF    FA    LG PVA  +F  + E
Sbjct:   36 PDAPSRKNPVFREWHHWLIINI-SGQNVSSGTVLSDYIGSGQPKGTGLHRYVFLVYKQPGSITDTQHGGNRPNFKVMDFANKHHLGNPVAGNFFQAKHE 133          
The following BLAST results are available for this feature:
BLAST of DC900214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FT_ARATH1.235e-2151.52Protein FLOWERING LOCUS T OS=Arabidopsis thaliana ... [more]
D1_ONCVO3.048e-1236.36Protein D1 (Fragment) OS=Onchocerca volvulus GN=D1... [more]
OV16_ONCVO5.200e-1236.36OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 ... [more]
D2_ONCVO8.869e-1235.35Protein D2 (Fragment) OS=Onchocerca volvulus GN=D2... [more]
D3_ONCVO2.581e-1135.35Protein D3 (Fragment) OS=Onchocerca volvulus GN=D3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900214 VSS Citrus sinensis cDNA clone VS28250 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900214 ID=DC900214; Name=DC900214; organism=Citrus sinensis; type=EST; length=578bp
TCCTGATGCTCCGAGTCCAAGCGAGCCACGCATGAGGGAGTGGGTTCACT
GGATCGTCGTGGACATTCCTGGTGGCACTAACCCCGCTCAAGGGATGGAG
ATTCTGCCGTACATGGGGCCACGGCCACCGGTGGGGATTCATCGATACAT
AATGGTGCTGTTTCAGCAGAAGGCTCCATTGGGGCTGGTCGAGCAGCCAC
CAACGAGGGCTAACTTCAACACTCGGCTCTTTGCTGGGAATCTGGATCTT
GGCCTCCCTGTGGCCACTATTTACTTCAACTGTCAGAAGGAACCGGCAAG
CCGCAGGCGTTGAACAATCAAGGAGGCGCTAGCTAGTGCTCAGCTCAAGT
GTAATAGACAAAGAGAGTTGTGGTGTCTTTAATATGTTTCTCTTTTGGTT
TTGGTTTTCCTTTTCCTTTCTTTCTTTTTTTTTCCCCGCAAGTGTACTGT
CTCGTTTTAGTCTTAGCATGTAGGTGTTGGCTTTGTTTAATCAGGCTAAA
GTTCATGTAATGTAAGCTGTTTCCCTTGTAATAAGCTTTCGTTTCAATAG
AAAAAAAAATCTGTTTTGTCTGTTTTTC
back to top