DC900211

Overview
NameDC900211
Unique NameDC900211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900211_ssr73 microsatellite DC900211_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5644 contig Csv1_Contig5644:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL221_DICDI (60S ribosomal protein L22 1 OS=Dictyostelium discoideum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 430
            FVIDC  P   KI+D+A+ EK+L +RIKV  K G LG +V ++++K+KI + +   FS                +RD+LRV+A+ K  + YELRYFNI ++E +E
Sbjct:   15 FVIDCTAPA-GKIVDVAAFEKYLHDRIKVDNKVGNLGSTVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTK--NTYELRYFNIGDSESQE 116          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL222_DICDI (60S ribosomal protein L22 2 OS=Dictyostelium discoideum GN=rpl22a PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 430
            FVIDC  P   KI+D+A+ EK+L +RIKV  K   LG +V ++++K+KI + +   FS                +RD+LRV+A+ K  + YELRYFNI ++E +E
Sbjct:   15 FVIDCTAPA-GKIVDVAAFEKYLHDRIKVDNKVSNLGSNVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTK--NTYELRYFNIGDSESQE 116          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_CAEEL (60S ribosomal protein L22 OS=Caenorhabditis elegans GN=rpl-22 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 430
            F ++C  PVED I+ I  LE FL E+IKV GK G L  ++V V   K+K++V S+  FS              +++RDWLRV+A NK  + YE+RYF+I  N+GE+
Sbjct:   23 FNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22A_YEAST (60S ribosomal protein L22-A OS=Saccharomyces cerevisiae GN=RPL22A PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  113 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 436
            TF +D   P E+ + D AS  K+L + IKV G  G LG++VTVT + T +TV S + FS              + +RDW+R +++  +   Y L ++ +   E EEED
Sbjct:   14 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLKKNQLRDWIRFVSTKTNE--YRLAFYQVTPEEDEEED 119          
The following BLAST results are available for this feature:
BLAST of DC900211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL221_DICDI3.979e-1641.9060S ribosomal protein L22 1 OS=Dictyostelium disco... [more]
RL222_DICDI1.975e-1540.9560S ribosomal protein L22 2 OS=Dictyostelium disco... [more]
RL22_CAEEL1.672e-1443.4060S ribosomal protein L22 OS=Caenorhabditis elegan... [more]
RL22A_YEAST3.152e-1335.1960S ribosomal protein L22-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionDC900211 VSS Citrus sinensis cDNA clone VS28248 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900211 ID=DC900211; Name=DC900211; organism=Citrus sinensis; type=EST; length=616bp
CTGCAGTGCTCTTCTCCTGTAAATTGTACAATTCGTAGTGCGGCGGAGCA
GAGACGGGAAAATGAGTCGCGGAGCAGCAGCAGCAGGGGTGAAGGGGAAG
AAAAAGGGAGCGACCTTCGTGATAGACTGCGGGAAGCCTGTGGAGGACAA
AATCATGGACATTGCGTCCTTGGAAAAGTTCCTCCAGGAGCGGATCAAGG
TCGGCGGCAAGGCTGGTGCCCTTGGGGATTCAGTTACCGTCACCCGTGAG
AAGACCAAGATCACCGTCACTTCTGACAGCAACTTCTCTAAGAGGTATCT
TAAATATTTGACCAAGAAGTACTTGAAGAAACACAATGTAAGAGATTGGC
TCCGAGTAATTGCTTCAAACAAGGACCGAAGTGTCTATGAGCTGCGATAC
TTCAACATTGCTGAGAATGAGGGAGAGGAGGAAGACTGAAGATCCATTTC
AGTATTTCCTCATATTATATCTATTCTGATTACTTGTTCTAGCTCTTTTT
TCTTTTTTTCTCCTGCGATCAAATCTGTGGACTTGTTTGAATTGTTTATG
AGATCATTCTTAGTTTATGTTCTGNTGAAATTTTGNTTACTTTTTAGATA
TATGGTTTTTTTTTTT
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