DC900207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 3.780e-47 Identity = 90/130 (69.23%), Postives = 115/130 (88.46%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLN-RHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV++T++RYKKA +D+SN G++ E N Q YQQE++KLR+QI +QN N R I+G++++T++ ++LK +E RLEKGI ++R+R Sbjct: 13 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRAR 142
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 5.109e-44 Identity = 92/132 (69.70%), Postives = 112/132 (84.85%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGS-ITEANT-QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+ NN+V+ATIDRYKKA A S G+ + E N Q+YQQE+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R+R Sbjct: 13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRAR 144
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 7.378e-43 Identity = 84/131 (64.12%), Postives = 109/131 (83.21%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT-QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S + + N+ Q++QQEA K+R QI+ +QN NRH++GE++ + KELK+LE RLEKGI R+RS+ Sbjct: 13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSK 143
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 7.163e-30 Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + T++RY+ C ++ + + + TQ + E +KL+ + +Q RH+LGE L L+ KEL+ LE +LE + + R R Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNAL-SETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQR 140
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.222e-29 Identity = 61/129 (47.29%), Postives = 94/129 (72.87%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS +G+LYE+A+++++ TIDRY + D + ++E N Q + EA + ++I +++ R +LGE + T + +EL+ +E +LEK + +R+R Sbjct: 13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRAR 141
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 1.222e-29 Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + +TI+RY + C + S + E TQ + QE TKL+ + + NR++LGE L + KEL+ LE +LE + R R Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQR 140
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 2.722e-29 Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGS-ITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + T+++Y C ++ S + Q + QE ++L+ ++ +Q RH+LGE L L+ KEL+ LE +LE + + R R Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQR 142
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29 Identity = 64/129 (49.61%), Postives = 94/129 (72.87%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEY++ S+++ IDRY K+ D + + +F+Q+EA LR+Q+ +Q +R ++GE LS LN KEL++LE +LE + VR++ Sbjct: 13 NSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKS-KDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTK 140
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.144e-27 Identity = 67/129 (51.94%), Postives = 92/129 (71.32%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS 563 N NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + S + T++RY++ C+ S S T+ QE KL+ ++ +Q +R++LGE L L+ KEL+ LE +L+K + ++RS Sbjct: 13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQR-CSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRS 140
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.493e-27 Identity = 62/129 (48.06%), Postives = 90/129 (69.77%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFSS GRLYE+++ +++ IDRY A + + +E + +Q+EA LR+Q+ +Q ++ ++GE LS L ++L+ LE RLE + +R R Sbjct: 13 NSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATSE--IKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMR 139 The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bpback to top |