DC900207

Overview
NameDC900207
Unique NameDC900207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:113..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 55/130 (42.31%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FSS+G+L+EY+ +S +   ++RY +             + ++ +  E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L   I  +RSR
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSR 142          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.223e-22
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  +RQVTF KRR GLLKKA+ELSVLCDAEVA+IVFS  G+L+E+++ S++ T+ RY      S  PG   +   Q    E   L+ +I  +Q  + H+ G+ L+ L+ KEL++LE +L   +  VR R
Sbjct:   13 NANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRER 141          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.037e-20
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  +RQVTF KRR+GLLKKA ELSVLCDAEVA+IVFS  G+L+EY++  ++ T+ RY        N  S + +  +    E   L+ Q+ ++Q  +  + G+ L+ L FKEL++LE +L   +  VR R
Sbjct:   13 NANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRY-------GNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRER 134          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.309e-20
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKA---CADSSNPGSITEANTQFYQQEATKLRRQIREIQ-NLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N T+RQVTF KRR+GL+KK +ELSVLCDA++ LIVFS++G+L EY     S++  IDRY KA     +  N       N Q   +E T+++ +   +Q NL R+  G+ LST+ F+EL  LE  L++ + +VR+R
Sbjct:   13 NNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVI-KELTRMKEETLNLQLNLQRY-KGDDLSTVRFEELTELEKLLDQSLNKVRAR 145          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 50/129 (38.76%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K          + +A  +    E  K+++    +Q   RH+ GE +++LN +EL  LE  LE G+  +R++
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNK 136          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQE---ATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N+T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L++Y+++S++  ++R       S N   + + + +    E    ++L ++I E  +  R + GE L  LN +EL+ LE  LE G+ RV  R
Sbjct:   13 NSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRD---LHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIER 141          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N T+RQVTF KRR GLLKK +ELSVLCDA++ LI+FSS+G+L+EY +  +S+   I RY +    S     + +   Q Y  E  K+RR    +Q   +   G+ LS   ++EL  LE +LE  + ++R+R
Sbjct:   16 NKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASL---PVEDNRVQLY-DEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRAR 142          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 49/129 (37.98%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K          + +A  +    E  K+++    +Q   RH+ GE +++LN +EL  LE  L+ G+  +R++
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNK 136          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLN---RHILGEALSTLNFKELKNLEARLEKGIGRV 557
            N T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L+E+ ++S++  ++R+      S N   + + + +    E +   R  +EI + +   R + GE L  L+ +EL+ LE  LE G+ RV
Sbjct:   13 NATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHN---LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRV 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.355e-19
Identity = 52/131 (39.69%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N+TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I++Y+ A    +N       + Q    E T+++ ++ +++   R   G+ LS+L   ++ +LE +LE  + +VR+R
Sbjct:   13 NSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHA----TNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRAR 139          
The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
AGL8_SINAL1.447e-2242.31Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL15_BRANA3.223e-2244.96Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL15_ARATH1.037e-2043.41Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
DEF21_ANTMA2.309e-2044.44MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
FBP1_PETHY3.016e-2038.76Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
JOIN_SOLLC3.939e-2043.18MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
FBP24_PETHY5.145e-2041.98MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
GLOB_TOBAC6.720e-2037.98Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
SVP_ARATH2.553e-1942.64MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
M17_MAIZE4.355e-1939.69MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC900207 VSS Citrus sinensis cDNA clone VS28244 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bp
AAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAAGAATCCTTATTCCTCT
TTAGGTCTTCTTTCCAGGTGTAGCTCAAGCAAGTTACCAGCAACCATGGA
GTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAA
GAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTC
ACCTTCTGTAAACGCCGAAATGGATTGTTGAAGAAAGCTTATGAACTGTC
TGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCC
GCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTAC
AAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAA
CACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGG
AGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTA
AACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGG
CAGAGTCAGATCCAGAACAAGT
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