DC900207

Overview
NameDC900207
Unique NameDC900207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:113..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSIT-EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +   S+   +++Y+      +N G I  +   +    E  +++++   +Q   RH+ GE L++L  KEL  +E  L+ GI  V  +
Sbjct:   13 NSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ------TNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYK--KACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRV 557
            N   RQVTF KRR GL KKA ELS+LCDAEV L+VFS+ G+L+++A+ S+   IDRY         + P  +             +L+ ++ E     R + GE L  LN ++L+ LE  LE G+G V
Sbjct:   32 NLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGED--SSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSV 157          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVTF KRR GLLKKA EL++LCDA++ +IVFS  G++YEY++   R     DRY KA +       +     Q   QE T+++ +   ++ + R  +G+ L++L  +++ NLE ++E  + +VR R
Sbjct:   13 NPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDV----QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLR 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQ--------QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I+ Y+            T  NT F +         E T++R ++ ++    R   G+ LS L   ++ +LE +LE  + +VR+R
Sbjct:   13 NATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ------------TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRAR 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N++NRQVT+ KRRNG++KKA E+SVLCDA V++I+F+S G+++E+ + S      +D Y K          + +   +    E  +++++   +Q   RH+ GE ++TLN+KEL  LE  LE G   ++++
Sbjct:   13 NSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGK-----RLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNK 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 56/124 (45.16%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  192 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA--TKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRV 557
            RQVTF KRR GL KKA ELSVLCDA+VALIVFSS G+L  +A++S+   ID+Y      S+N G   + +     + +    L  Q+ E     R + GE L  L+  EL+ LE  LE G+ RV
Sbjct:   17 RQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYN---THSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRV 137          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 49/129 (37.98%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA--NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVR 560
            N  NR VTF KRRNGL+KKA E++VLCDA+VALI+F+S G++ +Y   +  + A +D+Y+K          + +A  +    E  +++++   +Q   RH+ GE + +LN K L  +E  +E G+ +VR
Sbjct:   13 NANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGK-----KLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVR 136          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRA--TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSRTS 572
            N++NRQVT+ KRRNG++KKA E++VLCDA+V+LI+F + G+++EY + S      +D Y+K     ++   + +A  +    E  +++++   +Q   RH+ GE +++LN KEL  LE  L  G+  + ++ S
Sbjct:   13 NSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK-----TSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQS 140          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS--VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVT+ KRR G++KKA EL+VLCDA+VA+I+FSS G+ +E+ + S  ++   DRY++A              T  + ++   ++R +  ++++NR++       +GE L  L F EL+ LE  ++  +  VR R
Sbjct:   13 NATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHR 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQ-------QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS 563
            N  +RQVTFCKRR GLLKKA ELSVLCDAE+ +++FS +G+L+E A   ++   ID+Y K         S T    +  Q        E   L+++I  +Q    ++ G     +N +EL  LE  LE  I ++RS
Sbjct:   13 NPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRS 148          
The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
MADS2_ORYSJ1.267e-1840.15MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD47_ORYSJ1.267e-1840.63MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD31_ORYSJ1.267e-1839.69MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD29_ORYSJ1.655e-1838.85MADS-box transcription factor 29 OS=Oryza sativa s... [more]
GLOB_ANTMA1.655e-1836.64Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD22_ORYSJ2.162e-1845.16MADS-box transcription factor 22 OS=Oryza sativa s... [more]
PIST_ARATH4.816e-1837.98Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS2_PETHY4.816e-1836.09Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD16_ORYSJ4.816e-1836.23MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AGL12_ARATH8.214e-1838.97Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionDC900207 VSS Citrus sinensis cDNA clone VS28244 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bp
AAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAAGAATCCTTATTCCTCT
TTAGGTCTTCTTTCCAGGTGTAGCTCAAGCAAGTTACCAGCAACCATGGA
GTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAA
GAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTC
ACCTTCTGTAAACGCCGAAATGGATTGTTGAAGAAAGCTTATGAACTGTC
TGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCC
GCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTAC
AAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAA
CACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGG
AGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTA
AACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGG
CAGAGTCAGATCCAGAACAAGT
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