DC900207

Overview
NameDC900207
Unique NameDC900207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:113..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI---LGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVT+ KRRNGL KKA+EL+VLCDA V++I+FSS  +L+EY   N + +  +D Y+           +    TQ+ + + TK R+ +   +NL   I   LGE L  L+ +EL+ LE  +E     VR R
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTI-------SDVDVWATQYERMQETK-RKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRER 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 48/138 (34.78%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV--RATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVT+ KRRNGL KKA EL+VLCDA+V++I+ SS G+L+E+ + S+  +   D Y+K                  +     K++ Q+R+++ +NR++       +GE+L+ LN+++L+ L   ++  +  +R R
Sbjct:   13 NQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKT------------VGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRER 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG-EALSTLNFKELKNLEARLEKGIGRVRS 563
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N       +    +QEA  L+++I  +Q   R+I G  A   +  +EL  LE  LE  +  +RS
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRS 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG-EALSTLNFKELKNLEARLEKGIGRVRS 563
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N       +    +QEA  L+++I  +Q   R+I G  A   +  +EL  LE  LE  +  +RS
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRS 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEAT------KLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  +RQVTF KRR GLLKKA+E++VLCD +VA IVFS++G L+ YA++  ++   +++Y +    S     I E    F + E +      KLR +I  ++   R+++G+ L +L  ++++ LE +++  +  +RSR
Sbjct:   13 NEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEE----FPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSR 145          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 54/130 (41.54%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSS-NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS 563
            N  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E A N ++   ++RY+   A     PG++     Q  +Q    LR +I  +Q   R   G     +   +L  LE  LE  I ++R+
Sbjct:   13 NPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGAL--QRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRT 140          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 48/131 (36.64%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVT+ KRRNGL KKA+ELSVLCDA+V++I+ SS  +L+EY +   + +   D+Y+KA         +  ++ +  Q+   KL    R ++   R  +GE+L+ L ++++ NL   ++  +  +R R
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVG-----VDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRER 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  222 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            GLLKKA EL++LCDA++ +I+FSS G+++E+++   S+R  IDRY+K    S N   + + N Q Y  E T+++ +I ++Q   RH  GE L++L   E+  LE +LE  + +VRSR
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKL---SGNCAPVYD-NQQVY-CEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSR 113          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  192 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY---KKACADSSNPGSI-----------TEANTQFY--------QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRV 557
            RQVTF KRR GL KKA EL+VLCDA+VAL+VFSS G+L ++A++++   ID+Y    K    +    SI           T  N+  Y          + + L  Q+ E     R + GE L  L+ +EL+ +E  LE G+ RV
Sbjct:   17 RQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRV 160          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACAD-SSNPGSIT-EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y      +      +      +N G I  +   +    E  +++++   +Q   RH+ GE L++L  KEL  +E  L  G   +R +
Sbjct:   13 NSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK 143          
The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
AP3_ARATH1.401e-1741.04Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MADS1_PETHY1.830e-1734.78Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD26_ORYSJ3.121e-1740.77MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI3.121e-1740.77MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD20_ORYSJ6.954e-1735.77MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD33_ORYSJ9.082e-1741.54MADS-box transcription factor 33 OS=Oryza sativa s... [more]
DEFA_ANTMA1.186e-1636.64Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP32_ASAEU2.642e-1641.88MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD55_ORYSJ5.887e-1638.19MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MADS4_ORYSJ2.921e-1536.64MADS-box transcription factor 4 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionDC900207 VSS Citrus sinensis cDNA clone VS28244 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bp
AAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAAGAATCCTTATTCCTCT
TTAGGTCTTCTTTCCAGGTGTAGCTCAAGCAAGTTACCAGCAACCATGGA
GTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAA
GAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTC
ACCTTCTGTAAACGCCGAAATGGATTGTTGAAGAAAGCTTATGAACTGTC
TGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCC
GCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTAC
AAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAA
CACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGG
AGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTA
AACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGG
CAGAGTCAGATCCAGAACAAGT
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