DC900201

Overview
NameDC900201
Unique NameDC900201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5643 contig Csv1_Contig5643:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.703e-30
Identity = 71/191 (37.17%), Postives = 107/191 (56.02%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAME 588
            CG+CWAF+T+ ++E    I  N+L++LSEQ+++DCD   + GCNGGL+  AFE I K GGV  E+ YPY+A++  C ++         D +  +    E          P+ +AIDA  +D   Y +G+      + LNH V  VGYG   +   YW  +N+WG +WGE G+ R+Q+ I+     CG+  E
Sbjct:  133 CGACWAFATLGSLESQFAIKHNELINLSEQQMIDCDF-VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDA--ADIVNYKQGIIKYCFDSGLNHAVLLVGYGVE-NNIPYWTFKNTWGTDWGEDGFFRVQQNIN----ACGMRNE 315          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.611e-30
Identity = 72/192 (37.50%), Postives = 111/192 (57.81%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAV-AKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAME 588
            CG+CWAF+T+A++E    I  ++L++LSEQ+++DCD+  + GC GGL+  AFE I   GGV  E  YPY++++  C +   +   V +         +E+ L   +    P+ VAIDA  SD   Y +G+        LNH V  VGYG   +   YWI++NSWG +WGE+G+ ++Q+ ++     CGI  E
Sbjct:  133 CGACWAFATLASLESQFAIAHDRLINLSEQQMIDCDS-VDVGCEGGLLHTAFEAIISMGGVQIENDYPYESSNNYCRMD-PTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAIDA--SDILNYEQGIIKYCANNGLNHAVLLVGYGVE-NNVPYWILKNSWGTDWGEQGFFKIQQNVN----ACGIKNE 315          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.027e-29
Identity = 69/155 (44.52%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   13 ECGSCWAFSTIAAVEGINHIMTNK--LVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGEC--GTELNHGVAAVGYGT 462
            +CG CW+FST  A EG  ++   K  LVSLSEQ L+DC     N GC GGLM LAFE+I    G+ TE+ YPY A DG        + A  +  + NV +  E  L   V + P SVAIDA +  FQ Y  G++       T+L+HGV AVG+GT
Sbjct:  130 QCGGCWSFSTTGATEGAQYLANGKKNLVSLSEQNLIDCSGSYGNNGCEGGLMTLAFEYIINNKGIDTESSYPYTAEDGKKCKFNPKNVAAQLSSYVNVTSGSESDLAAKVTQGPTSVAIDASNQSFQLYVSGIYNEPACSSTQLDHGVLAVGFGT 284          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.027e-29
Identity = 69/161 (42.86%), Postives = 93/161 (57.76%), Query Frame = 1
Query:   13 ECGSCWAFSTIAAVEGINHIMT--NKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGEC--GTELNHGVAAVGYGTTLDGTK 480
            ECG CW+FS   A EG  +I    + L S+SEQ+L+DC     N GC GGLM LAFE+I   GG+ TE+ YP+ AN   C  +  S+    +  + NV +  E  L   V + P SVAIDA    FQFYS G++       T+L+HGV AVG+G+   G++
Sbjct:  132 ECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDCSGSYGNNGCEGGLMTLAFEYIINNGGIDTESSYPFTANTEKCKYN-PSNIGAELSSYVNVTSGSESDLAAKVTQGPTSVAIDASQPSFQFYSSGIYNEPACSSTQLDHGVLAVGFGSGSSGSQ 291          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.288e-29
Identity = 83/227 (36.56%), Postives = 109/227 (48.02%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGIN-HIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTL------------------------------DGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPI 603
            CGSCWAF+ I   E +  H      +S SEQ++VDC T+ N GC+GG    AF ++   G V    +YPY+ ++    ++   S    +    +V  N     L  V   PV++A+ A S DF  YS GVF GEC  ELNH V  VGYG                                 D   YWIVRNSWGP WGE GYIR++R  +   G CG+  +  +PI
Sbjct:  284 CGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCSTE-NYGCDGGNPFYAFLYMINNG-VCLGDEYPYKGHEDFFCLNYRCSLLGRVHFIGDVKPNELIMALNYVG--PVTIAVGA-SEDFVLYSGGVFDGECNPELNHSVLLVGYGQVKKSLAFEDSHSNVDSNLIKKYKENIKGDDDDDIIYYWIVRNSWGPNWGEGGYIRIKRNKAGDDGFCGVGSDVFFPI 505          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.903e-29
Identity = 71/156 (45.51%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   13 ECGSCWAFSTIAAVEGINHIMTNK---LVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGV-FTGECG-TELNHGVAAVGYGT 462
            +CG CW+FST  + EG + I +     LVSLSEQ L+DC     N GC GGLM LAFE+I    G+ TE+ YPY A DG     K S+    I  ++NV +  E +L  A    PVSVAIDA +  FQ Y  G+ +   C  T+L+HGV  VGYG+
Sbjct:  131 QCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSYGNNGCEGGLMTLAFEYIINNKGIDTESSYPYTAEDGKECKFKTSNIGAQIVSYQNVTSGSEASLQSASNNAPVSVAIDASNESFQLYESGIYYEPACSPTQLDHGVLVVGYGS 286          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.903e-29
Identity = 82/198 (41.41%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQ-PVSVAIDAGSSDFQFYSEGV---FTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEAS 594
            CGSCWAFS    VEG   +    L+SLSEQEL+DCD   ++ C GGL   A+  IK  GG+ TE  Y YQ +  +C+ S E +     D  E   + +E  L   +AK+ P+SVAI+A     QFY  G+       C   L +H V  VGYG   D   +W ++NSWG +WGEKGY  + RG     G CG+   AS
Sbjct:  292 CGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVYINDSVE--LSQNEQKLAAWLAKRGPISVAINA--FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSD-VPFWAIKNSWGTDWGEKGYYYLHRG----SGACGVNTMAS 479          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.937e-28
Identity = 73/193 (37.82%), Postives = 109/193 (56.48%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE--DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAME 588
            CG+CW F+++ A+E    I  ++L+ LSEQ+LVDCD   + GC+GGL+  A+E I K GGV  E  Y Y+A    C +          + +  V  N E  + LL+ V   P+++A+DA   D   Y  G+ +      LNH V  VGYG   +   YWI++NSWG ++GE GY+R++RG++     CG+  E
Sbjct:  147 CGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF-VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKAERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVG--PIAIAVDA--VDLTDYYGGIVSFCENNGLNHAVLLVGYGVE-NNVPYWIIKNSWGSDYGEDGYVRVRRGVNS----CGMINE 329          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.530e-28
Identity = 79/197 (40.10%), Postives = 103/197 (52.28%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGV---FTGECGT-ELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEAS 594
            CGSCWAFS    VEG   +    L+SLSEQEL+DCD   ++ C GGL   A+  IK  GG+ TE  Y YQ +  TC+ S + +  V I+    +  N          K P+SVAI+A     QFY  G+   F   C    ++H V  VGYG       YW ++NSWG +WGE+GY  + RG     G CG+   AS
Sbjct:  270 CGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD-KVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQGHVQTCNFSAQMA-KVYINDSVELSRNENKIAAWLAQKGPISVAINA--FGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNR-SNIPYWAIKNSWGSDWGEEGYYYLYRG----SGACGVNTMAS 457          
BLAST of DC900201 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.640e-27
Identity = 74/221 (33.48%), Postives = 107/221 (48.42%), Query Frame = 1
Query:   16 CGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTK-------------------------YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPI 603
            CGSCWAF+++  +E +       ++S SEQE+VDC  D N GC+GG    +F ++ +   +    +Y Y+A D    ++      VS+     V  N     L  V    V+V ++   +DF  YSEGV+ G C  ELNH V  VGYG  ++ TK                         YWI++NSW  +WGE G++R+ R  +     CGI  E  YPI
Sbjct:  354 CGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSKD-NFGCDGGHPFYSFLYVLQNE-LCLGDEYKYKAKDDMFCLNYRCKRKVSLSSIGAVKENQLILALNEVGPLSVNVGVN---NDFVAYSEGVYNGTCSEELNHSVLLVGYGQ-VEKTKLNYNNKIQTYNTKENSNQPDDNIIYYWIIKNSWSKKWGENGFMRLSRNKNGDNVFCGIGEEVFYPI 568          
The following BLAST results are available for this feature:
BLAST of DC900201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
CATV_NPVBM2.703e-3037.17Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATV_NPVEP4.611e-3037.50Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CYSP7_DICDI1.027e-2944.52Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CYSP6_DICDI1.027e-2942.86Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
CYSP_PLAVN2.288e-2936.56Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CYSP4_DICDI3.903e-2945.51Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CATF_HUMAN3.903e-2941.41Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATV_NPVSE1.937e-2837.82Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATF_MOUSE2.530e-2840.10Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CYSP_PLAFA1.640e-2733.48Trophozoite cysteine proteinase OS=Plasmodium falc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900201 VSS Citrus sinensis cDNA clone VS28238 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900201 ID=DC900201; Name=DC900201; organism=Citrus sinensis; type=EST; length=804bp
AATTCGGCACGAGAATGCGGTAGCTGCTGGGCTTTTTCAACAATTGCAGC
AGTAGAGGGCATTAATCACATTATGACAAATAAGCTCGTTTCTTTGTCTG
AGCAAGAGTTAGTTGATTGTGACACTGATCAAAACCAAGGATGTAATGGA
GGGCTAATGGAATTGGCATTTGAGTTCATCAAGAAAAAGGGTGGCGTAAC
AACAGAGGCTAAGTACCCTTACCAAGCTAATGATGGAACATGTGACGTTT
CAAAGGAAAGTTCCCCAGCAGTGTCAATTGACGGACATGAAAATGTACCT
GCTAATCACGAGGATGCTCTGCTTAAGGCAGTTGCAAAACAGCCTGTGTC
AGTAGCCATAGATGCCGGCAGTTCAGATTTCCAGTTCTATTCAGAGGGTG
TATTTACTGGAGAATGTGGCACAGAGCTGAATCATGGAGTTGCAGCTGTG
GGCTACGGTACAACACTCGATGGAACCAAGTATTGGATAGTGAGGAACTC
ATGGGGACCTGAATGGGGAGAGAAGGGTTACATCAGAATGCAGCGCGGCA
TCTCAGACAAAAAGGGACTCTGTGGTATTGCAATGGAAGCTTCATATCCC
ATCAAGAAATCTGCAACAAACCCAACAGGACCTTCAGATTATCCTAAGGA
TGAGCTCTAGACACGGTTCACTATTGTCTTTGGCTTTTCTCTGCATTTCA
AGCTCAGCGGTTATCTCTTCTGTGTTAAAGTTGCATGTAATATGCCCTTG
TGATTCATGATTGAATAATGTTTCGATTTATGCAAATAAAGCCAACATTT
TACA
back to top