DC900200

Overview
NameDC900200
Unique NameDC900200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.793e-17
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFN+PM+VTP  G G C +  C A++   CP  LQ       G VVAC S C  FG  + CC     + + C  +++S+ F   CP   +YA D    +  CS      + FC
Sbjct:  127 SLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIG--SDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFC 241          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.459e-16
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFN+P+ + P   +  C    C+AD+ A CP  L+V           C S C  F TD+ CCRN Y     C A+++S+ FK+ CP   +YA D  +    C+S  +  ++FC
Sbjct:  121 SLVDGFNIPLAINPTNAQ--CTAPACKADINAVCPSELKVDG--------GCNSACNVFKTDQYCCRNAY--VDNCPATNYSKIFKNQCPQAYSYAKDDTATF-ACASGTDYSIVFC 224          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.323e-13
Identity = 39/117 (33.33%), Postives = 55/117 (47.01%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFN+PM  +P  G   C  + C A +   CP  L+ +          C + C    T+E CC N    P +C  +  S FFK  CP   +Y  D P+ +  C S    +V+FC
Sbjct:  122 SLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQG--------GCNNPCTVIKTNEYCCTN---GPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFC 225          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.340e-13
Identity = 38/117 (32.48%), Postives = 55/117 (47.01%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFNVPM  +P    G    + C AD+   CP  L+ +          C + C  F TD+ CC +      +C  + +S FFK  CP   +Y  D P     C+   + +V+FC
Sbjct:   99 SLVDGFNVPMDFSP-TSNGCTRGISCTADINGQCPSELKTQG--------GCNNPCTVFKTDQYCCNSG-----SCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFC 201          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 7.403e-13
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDC-SSPRELKVIFC 735
            +LVDGFN+PMT  P +   G C  + C A++   CP+ L+V   PG      C + C  FG  + CC     +   C  + FS+FFK  CP   +Y  D P+    C       +VIFC
Sbjct:  120 SLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 225          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.263e-12
Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFNV M  +P  G G    + C AD+   CP  L  R+P G      C + C  F TD+ CC +       C  ++FS+FFK  CP   +Y  D  +    C +    KV+FC
Sbjct:  122 SLVDGFNVAMEFSPTSG-GCTRGIKCTADINGQCPNEL--RAPGG------CNNPCTVFKTDQYCCNSG-----NCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFC 224          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 41/119 (34.45%), Postives = 57/119 (47.90%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDC-SSPRELKVIFC 735
            +LVDGFN+PMT  P +   G C  + C A++   CP +L+V   PG      C + C  FG  + CC     +   C  +  S FFK  CP   +Y  D P+    C S     +V+FC
Sbjct:  112 SLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 217          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 41/117 (35.04%), Postives = 58/117 (49.57%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFN+PM  +P      C  + C AD+   CP  L  R+P G      C + C  F T++ CC N   S   C  + +S FFK  CP   +Y  D P+    C++    +V+FC
Sbjct:  120 SLVDGFNIPMEFSPTSSN--CHRILCTADINGQCPNVL--RAPGG------CNNPCTVFQTNQYCCTNGQGS---CSDTEYSRFFKQRCPDAYSYPQDDPTSTFTCTN-TNYRVVFC 222          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 41/119 (34.45%), Postives = 58/119 (48.74%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHE-GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDC-SSPRELKVIFC 735
            +LVDGFN+PMT  P +   G C  + C A++   CP+ L+V   PG      C + C  FG  + CC     +   C  +  S+FFK  CP   +Y  D P+    C S     +V+FC
Sbjct:  120 SLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 225          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 41/119 (34.45%), Postives = 57/119 (47.90%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDC-SSPRELKVIFC 735
            +LVDGFN+PMT  P +   G C  + C A++   CP +L+V   PG      C + C  FG  + CC     +   C  +  S FFK  CP   +Y  D P+    C S     +V+FC
Sbjct:  120 SLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 225          
The following BLAST results are available for this feature:
BLAST of DC900200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TLP2_PRUPE3.793e-1736.75Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
PRR3_JUNAS2.459e-1635.90Pathogenesis-related protein OS=Juniperus ashei PE... [more]
PRR1_TOBAC3.323e-1333.33Pathogenesis-related protein R major form OS=Nicot... [more]
P21_SOYBN4.340e-1332.48Protein P21 OS=Glycine max PE=1 SV=1[more]
OSMO_TOBAC7.403e-1335.29Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
TLP_ACTDE1.263e-1235.90Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
TPM1_SOLLC2.154e-1234.45Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OSL3_ARATH2.154e-1235.04Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
OS81_SOLCO2.154e-1234.45Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
OS13_SOLCO2.154e-1234.45Osmotin-like protein OSML13 OS=Solanum commersonii... [more]

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Properties
Property NameValue
Genbank descriptionDC900200 VSS Citrus sinensis cDNA clone VS28237 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900200 ID=DC900200; Name=DC900200; organism=Citrus sinensis; type=EST; length=1028bp
CTAGTCTCGAGTTTTTTTTTTTTTTTTTTATTACCAAGAAATTTTAAAAT
ATAGAATTAAAATTGAAACGACGAGGAGAAAATCCAAAGAAGTATCTTAA
ATCTCCAACATAAGCCCATAATCGGATCCTCATGACATAACACAATAACA
ATAGAAATATCTTAGTGACATTGCCAAAACAAAACATCCTAAATCCATAA
ATTCTATGATTAAACAAAAACTTTAAAAACAACCTCTTATCAAAATTAGT
CAACGCTCTGCATAATATCCTCTGGGGTGAACTTGGTACCCTTCTCCTTG
TCGGCGGCGGCACGTCCCTTGGCCTTGCGATCGAGCAAAGACTTCCTGTC
CTTGTCCAGACGGAGCTTGGTGATCACGACCTTTGCTCTAGTCGACGGCT
TCAACGTCCCCATGACTGTCACCCCGCACGAGGGCAAGGGCGTCTGTCCG
GTAGTGGGTTGTCGCGCTGACCTGCTAGCCACGTGTCCTCAGAACCTGCA
GGTGAGGTCACCGCCGGGTCACGGCCGCGTGGTGGCATGTAAGAGTGGGT
GTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAACCATTACAACAGT
CCGCAGACATGCCGGGCTTCGAGCTTTTCGGAGTTCTTCAAGCACGCTTG
TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
GCTCCTCGCCACGTGAGCTAAAAGTTATTTTCTGTCACTAGAGAAGCATG
AGAATAATAATAAGCTGGAGCATCAAGCTTCACAGTGCTTAGGATTGTTG
TGTTTGTTTTCGTCAATTAGCAGTATCTTGCTTTTTAATTAATCTCGTAA
CTAAAAAGAGAAATTAAAAATGATCAATGTGAGCTTGTGTCATGTTGGGT
GTCATCAGTCTGTACGTTGTGGTGTGTTTTGTAAGTTCCAATTCAATTTG
GAATGGGAATGTAATGAGTTTGATGTGTGGTATATTTTCTTTTTTCATGA
AAAAGTAAAATAGAAATATTTTTCTTCA
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