DC900196

Overview
NameDC900196
Unique NameDC900196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:970..1699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 55/123 (44.72%), Postives = 77/123 (62.60%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 406
            +RG      D+P + A  F  Q++++ HP  I  GY PV   HTS IA +  EL  K+D +SG+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  +V++K
Sbjct:  300 RRGDVCGHTDNPPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 50/132 (37.88%), Postives = 86/132 (65.15%), Query Frame = 2
Query:   11 QRKNVLQGSQRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 406
            ++K++ +G   G       +P + A  F +Q+I+++HP  +  GY PV+ CHT+ +A   SE V+KI+  +G   E+ PKFLK GD+ ++K+ P +P  +ETF ++P +GRFA+RDM  T+A G++K + ++
Sbjct:  306 EKKDIKRGDVLG----DPANPPKVAKEFLAQIIVIHHPTALAPGYTPVMHCHTAQVAAIMSEFVSKINPATGAVEEENPKFLKVGDSAIIKIRPVRPTPIETFKEFPEMGRFALRDMGATIAAGIVKEITEE 433          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   68 DPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 409
            +P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   68 DPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 409
            +P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   68 DPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 409
            +P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 400
            +RG      ++P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++ +V+
Sbjct:  312 KRGDVAGHPENPPTVADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 400
            +RG      D+    A    ++V+I+ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I  V+
Sbjct:  317 RRGDVLGKVDNVPTVAEEIVARVVILWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 403
            +RG    P ++P      FT+Q++++NHP  I  GY PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G   ++EK
Sbjct:  302 KRGDVCGPANNPPTVVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 406
            +RG      D+P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  +V++K
Sbjct:  300 RRGDVCGHADNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIALNKKLDPKTGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 50/130 (38.46%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   14 RKNVLQGSQRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 403
            + ++ +G   G   +P     R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ +++K
Sbjct:  298 KNDIKRGDVAGHTDKPPT-VVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
The following BLAST results are available for this feature:
BLAST of DC900196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METBF8.424e-2544.72Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_CENSY8.424e-2537.88Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METMP1.100e-2446.49Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM61.100e-2446.49Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM51.100e-2446.49Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_IGNH41.437e-2443.80Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_PYRIL3.201e-2444.63Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PICTO5.460e-2440.16Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_METMA9.314e-2443.09Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_PYRHO1.216e-2338.46Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionDC900196 VSS Citrus sinensis cDNA clone VS28233 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900196 ID=DC900196; Name=DC900196; organism=Citrus sinensis; type=EST; length=730bp
CAATGTGGCTCAACGTAAGAACGTGCTGCAAGGATCCCAGCGTGGTTTGT
GCTNCCAACCGAAGGATGATCCGGCCAGGNAAGCTGCCAACTTCACCTCA
CAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCC
AGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCG
TGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAG
TTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCC
CATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCG
TTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAA
AAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAA
GTGAATCGGGTTGGTTAATGTTGCTTTATCCGCAGATGGAGTCTATTTTA
ATAATTGTAGTTATACAAACTTGGTTATTTTTGGTACTGTTATAGTTCGA
TGCATGCTTTCCTTTTTAGGTTTTAGTTTGTTGCCTTTGGTGTCGGGTAN
NGATTCCCAGAATTGGGTGCTTGACAGGCGGTGGCGCAGCTCTAACCTGG
AGTCTCAATTTTATTAATAGTTATGGTCTTTGTTTGTATTGATACTTGAG
GTGGTTCGGTTTCATCTGAATCGGCTCAGA
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