DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:218..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.290e-66
Identity = 121/238 (50.84%), Postives = 157/238 (65.97%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLG++Q++   NKMDA    Y + RY+++  EVS  LK +GY+P K+ FVP+S  +GDN+  +S N  WY+GPTLL+ LD    P RP+DKPLR+P+QDV+ I G GTV VGRVETGVLK G  V   P     +V
Sbjct:   50 KEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDAVN--YDQKRYEQVKAEVSKLLKLLGYDPSKIHFVPVSAIKGDNVRTKSPNTPWYQGPTLLEVLDTFQPPPRPTDKPLRMPIQDVFSITGAGTVVVGRVETGVLKVGDKVVIVPPAKVGDV 285          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.290e-66
Identity = 121/238 (50.84%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLG++Q++   NKMD     Y + RY+++  EVS  LK +GY+P K+ FVP+S  +GDN+  +S+N  WY GPTLL+ LD    P RP+DKPLRLP+QDV+ I G GTV VGRVETGVLK G  V   P     +V
Sbjct:   50 KEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDVVN--YDQKRYEQVKSEVSKLLKLLGYDPSKIHFVPVSAVKGDNVRTKSSNTPWYNGPTLLEVLDTFQPPPRPTDKPLRLPIQDVFSITGAGTVVVGRVETGVLKAGDRVVVVPPAKVGDV 285          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.414e-65
Identity = 123/238 (51.68%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDFIKNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLGV+Q++   NKMD     Y + RY++I  EVS  LK +GY+P K+ F+P+S  +GDN+  +S+N  WY GPTLL+ALD    P RP DKPLR+P+QDV+ I G GTV VGRVETGVLK G  V   P     +V
Sbjct:   50 KEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDIVN--YDQKRYEQIKAEVSKLLKLLGYDPSKIHFIPVSAIKGDNVKTKSSNTPWYNGPTLLEALDTFQPPPRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKVGDRVVIVPPAKVGDV 285          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.414e-65
Identity = 126/234 (53.85%), Postives = 167/234 (71.37%), Query Frame = 1
Query:    1 ERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPS 696
            E+  K+  EM ++  SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L+ G  V F P+
Sbjct:   36 EQIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPA 258          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.847e-65
Identity = 123/238 (51.68%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    4 RFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+++      ++GI    QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +   L K +G+NPE++ FVP++   GDN+ ++S    WYKGPT+ + +D    P++P++ PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+
Sbjct:   41 RLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDA--KSGIQP--QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSERTPWYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEI 272          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.150e-65
Identity = 118/231 (51.08%), Postives = 163/231 (70.56%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGP 693
            E+++KEA    K +F++AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD A+L+  +  G  +       QT+EH  L+ TLG+ Q+I   NKMDA    Y + RY+E+ +EVS  L+ +G+ P+++PF+P S F+G N+ + +    WY G T+L+AL+ + EP++P+  PLR+P+QDVY I GIG VPVGRVETG++K G  V F P
Sbjct:   40 EQYKKEAESKGKGTFEFAWVMDSLKEERERGITIDIAHRRFDTEKYYFTVVDCPGHRDFVKNMITGASQADAAILVCAAPDGVMQ-------QTKEHIFLSKTLGINQLIIAVNKMDAIN--YDQKRYNEVKEEVSKILRMIGFKPDQIPFIPTSAFKGTNIAKHAEETPWYTGVTILEALNALKEPEKPTQLPLRVPIQDVYTISGIGLVPVGRVETGIMKKGDKVIFRP 261          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.150e-65
Identity = 125/234 (53.42%), Postives = 167/234 (71.37%), Query Frame = 1
Query:    1 ERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPS 696
            E+  K+  EM ++  SFK+AWV+D+L+ ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L+ G  V F P+
Sbjct:   38 EQIIKKFEEMGEKGKSFKFAWVMDRLREERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPA 260          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.114e-65
Identity = 123/238 (51.68%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    4 RFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+++      ++GI    QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +   L K +G+NPE++ FVP++   GDN+ ++S    WYKGPT+ + +D    P++P++ PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+
Sbjct:   41 RLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDA--KSGIQP--QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSERNPWYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYTITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEI 272          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.018e-65
Identity = 125/234 (53.42%), Postives = 164/234 (70.09%), Query Frame = 1
Query:    1 ERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPS 696
            E   K+  EM ++  SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y + ++ ++ ++V   L+ +GY  +  P +PIS +EGDN++++S  + WY GPTLL+ALD I EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G  V F P+
Sbjct:   36 ENIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDEKKFKQVAEQVKKLLQMLGY--KDFPIIPISAWEGDNVVKKSDKMPWYNGPTLLEALDQIPEPPKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPA 258          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.166e-65
Identity = 126/234 (53.85%), Postives = 164/234 (70.09%), Query Frame = 1
Query:    1 ERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPS 696
            E   K+  EM ++  SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y +  ++++  +V   LK +GY  +  P +PIS +EGDN++++S  + WYKGPTL++ALD I EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G  V F P+
Sbjct:   36 ENIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDQKVFEKVKAQVEKLLKMLGY--KDFPVIPISAWEGDNVVKKSDKMPWYKGPTLIEALDQIPEPPKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPA 258          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PYRCJ8.290e-6650.84Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR8.290e-6650.84Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRIL1.414e-6551.68Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRFU1.414e-6553.85Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METVS1.847e-6551.68Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_UNCMA3.150e-6551.08Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_PYRWO3.150e-6553.42Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_METVA4.114e-6551.68Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_PYRKO7.018e-6553.42Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_THEGJ9.166e-6553.85Elongation factor 1-alpha OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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