DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:218..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CORK4 (Elongation factor Tu OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.996e-27
Identity = 83/205 (40.49%), Postives = 115/205 (56.10%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +DK   E+ERGITI+IA  ++ T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  ++ E  P V IS     EGD   E+S  LD      L+DA D +I +P R +DKP  +P++D++ I G GTV  GRVE G L
Sbjct:   52 IDKAPEEKERGITINIAHVEYSTPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEDLIELVEMEVRELLAEQDFD-EDAPIVHISALKALEGDEKWEQSI-LD------LMDACDESIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGKL 238          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.996e-27
Identity = 75/204 (36.76%), Postives = 114/204 (55.88%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +DK   E+ERGITI  +  ++ET   +   ID PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +SSY    G+  + +P +     +G  +   +   +W  K   L++A+DN I  P R  DKP  +P++DV+ I G GTV  GR+E GV+K
Sbjct:   50 IDKAPEEKERGITISTSHVEYETPSRHYAHIDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVNVPSIVVFMNKVDIADPELIELVEMELRELLSSY----GFPGDDIPII-----QGSALGALNGEAEWVGKIEELMEAVDNYIPTPVRDVDKPFLMPVEDVFSISGRGTVGTGRIERGVIK 237          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_ANAPZ (Elongation factor Tu OS=Anaplasma phagocytophilum (strain HZ) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.996e-27
Identity = 75/205 (36.59%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D    +   +  D  ++E+   L + GY+ + +  V  S  +    +E   +  W  K   L+ AL+ I  P R  DKP  + ++DV+ I G GTV  GR+E GV++ G
Sbjct:   48 IDKAPEEKARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWINKCDVVEDEEMLSLVDMEIREL---LSQYGYDGDSIDAVRGSAVKA---LEEDADGPWSDKIMELVGALEKIELPMREKDKPFLMSVEDVFSIPGRGTVVTGRIERGVVRVG 239          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 75/207 (36.23%), Postives = 113/207 (54.59%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    E+ERGITI+ +  +++T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK+D    K       E+V+ E+   L K  Y+ E +P +     +G  +   +    W K   TL+  +DN I EP R  DKP  +P++DV+ I G GTV  GR+ETG +  G
Sbjct:   50 IDNAPEEKERGITINTSHVEYQTEIRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPNLVVFMNKVDQVDDK----EILELVEIEIRELLSKYEYDGENIPII-----QGSALGALNGEKKWEKQIETLMKTVDNYIKEPIRNIDKPFLMPIEDVFTITGRGTVATGRIETGTINTG 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_STRCJ (Elongation factor Tu OS=Streptomyces cinnamoneus GN=tuf PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 84/233 (36.05%), Postives = 120/233 (51.50%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVSLLRCTTSXAG 747
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA   GV  ++   NK D    +      +  V+E+ S  +  G N   V    +   EGD         +W  G  LL  +    +NI +P+R  DKP  +P++DV+ I G GTV  GR+E GVLK  +  T    G+ TE    + TT+  G
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQSGVPYIVVALNKADMVDDEEIMELVELEVRELLSEYEFDGDNCPVVQVSALKALEGDK--------EW--GEKLLGLMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLK--VNETVDIIGIKTE----KTTTTVTG 261          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CORGL (Elongation factor Tu OS=Corynebacterium glutamicum GN=tuf PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 80/208 (38.46%), Postives = 114/208 (54.81%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E+ P V IS     EGD          W  G  +L+ +    DNI +P R +DKP  +P++D++ I G GTV  GRVE G L
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVE---DEEIIELVEMEVRELLAEQDYD-EEAPIVHISALKALEGDE--------KW--GKQILELMQACDDNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTL 238          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CORGB (Elongation factor Tu OS=Corynebacterium glutamicum (strain R) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 80/208 (38.46%), Postives = 114/208 (54.81%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E+ P V IS     EGD          W  G  +L+ +    DNI +P R +DKP  +P++D++ I G GTV  GRVE G L
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVE---DEEIIELVEMEVRELLAEQDYD-EEAPIVHISALKALEGDE--------KW--GKQILELMQACDDNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTL 238          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU1_DESPS (Elongation factor Tu 1 OS=Desulfotalea psychrophila GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 77/215 (35.81%), Postives = 114/215 (53.02%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV----GYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN----EPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  M+   NK D           DE+++ V   L+++     +  + VPF+      G  ++      D  K   + + +D I+    EP+R  D+P  +P++DV+ I G GTV  GRVE G++K G  V
Sbjct:   50 IDKAPEEKERGITIATAHVEYETVNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGAMP-------QTREHILLARQVGVPAMVVFLNKCDMVDD-------DELIELVEMELRELLDDYEFPGDDVPFI-----HGSALLALENPEDEDKAACIWELMDQIDSYIPEPERDVDQPFLMPVEDVFSISGRGTVATGRVERGIIKVGEEV 245          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_CHRVO (Sulfate adenylyltransferase subunit 1 OS=Chromobacterium violaceum GN=cysN PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 80/245 (32.65%), Postives = 123/245 (50.20%), Query Frame = 1
Query:    7 FEKEAAEMNKRSFKY---------AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            FE + A + + S KY         A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S ++ A+++ID+  G          QTR H+ +   LG++ +I   NKMD     YS+  Y+ I  E  ++ + +  +   + FVPIS   GDN++ R+    WY+G TL+  L+ +           RLP+Q V +         G + +G + PG  V   PSG  + V
Sbjct:   52 FEDQLAAIERDSKKYNTTDQDIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIIADCPGHEQYTRNMATGASTSNLAIILIDARRG-------VQTQTRRHSYIVSLLGIRHVIVAVNKMDLV--DYSEDVYNRIRDEYLTFAEHL--DIPDIHFVPISALRGDNVVSRTEAAPWYQGATLMHLLETVQISHDAPLSAFRLPVQYVNRPNLDFRGFCGTIASGAVHPGDAVVALPSGKESRV 285          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_STRAU (Elongation factor Tu OS=Streptomyces aureofaciens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 84/236 (35.59%), Postives = 123/236 (52.12%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVSLLRCTTSXAG 747
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V +S     EGD         +W  G  LL  +D ++E    P R +DKP  +P++DV+ I G GTV  GR+E GVLK  +  T    G+ TE    + TT+  G
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVD---DEEILELVELEVRELLSEYDFPGDDLPVVQVSALKALEGDK--------EW--GDKLLGLMDAVDEAIPTPPRDTDKPFLMPVEDVFTITGRGTVVTGRIERGVLK--VNETVDIIGIKTE----KTTTTVTG 261          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CORK41.996e-2740.49Elongation factor Tu OS=Corynebacterium kroppenste... [more]
EFTU_CHLT31.996e-2736.76Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_ANAPZ1.996e-2736.59Elongation factor Tu OS=Anaplasma phagocytophilum ... [more]
EFTU_SULMW2.607e-2736.23Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]
EFTU_STRCJ2.607e-2736.05Elongation factor Tu OS=Streptomyces cinnamoneus G... [more]
EFTU_CORGL2.607e-2738.46Elongation factor Tu OS=Corynebacterium glutamicum... [more]
EFTU_CORGB2.607e-2738.46Elongation factor Tu OS=Corynebacterium glutamicum... [more]
EFTU1_DESPS2.607e-2735.81Elongation factor Tu 1 OS=Desulfotalea psychrophil... [more]
CYSN_CHRVO2.607e-2732.65Sulfate adenylyltransferase subunit 1 OS=Chromobac... [more]
EFTU_STRAU3.405e-2735.59Elongation factor Tu OS=Streptomyces aureofaciens ... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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