DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:218..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 73/211 (34.60%), Postives = 116/211 (54.98%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V ++ F        + N D   G ++L+ ++ ++E    P+R ++KP  +P++DV+ I G GTV  GR+E G++K G  V
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPALVVALNKCDMVD---DEELIELVEMEVRELLSEYEFPGDDIPVVRVAAFP-------ALNGDAKWGESVLELMNAVDEYIPTPERDTEKPFLMPVEDVFTITGRGTVITGRIERGIVKVGEEV 245          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:   50 IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:   50 IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:   50 IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_HELMI (Elongation factor Tu OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 80/222 (36.04%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   22 AEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            +++ K SFK    +D    ERERGITI+ A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L    +  + +P V  SG +           +W  K   L+D +D  I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G  V
Sbjct:   37 SKVGKASFKKYDEIDAAPEERERGITINTAHVEYETDNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKADMVD---DPELMELVEMEVRELLSSYEFPGDDIPIVAGSGLKALECGCGKRECEWCGKIWALMDEVDKYIPTPERATDKPFLMPVEDVFTITGRGTVATGRVERGTIKVGEEV 248          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_EUBE2 (Elongation factor Tu OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 75/205 (36.59%), Postives = 109/205 (53.17%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK D           D  ++E+   L + G+  +  P +  S  +         N +W  G  +L+ +  I+E    P+R +DKP  +P++DV+ I G GTV  GRVE GVL
Sbjct:   51 IDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVAATDGVM-------AQTREHILLARQVGVPYIVVFMNKCDMVDDPELLELVDMEIREL---LNEYGFPGDDTPIIQGSALKA----LEDPNSEW--GDKILELMHTIDEYVPDPERDTDKPFLMPVEDVFSITGRGTVATGRVERGVL 239          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CORDI (Elongation factor Tu OS=Corynebacterium diphtheriae GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 75/206 (36.41%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L +  Y+ E+ P + IS  +     E+ T        +++D +    D+I +P+R +DKP  +P++D++ I G GTV  GRVE G LK
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEIRELLAEQDYD-EEAPIIHISALKALEGDEKWTQ-------SIIDLMQACDDSIPDPERETDKPFLMPIEDIFTITGRGTVVTGRVERGSLK 239          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CLAMS (Elongation factor Tu OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGD-NMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +D    ER+RGITI+I+  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V +SG    EGD   +E+           L++A+D +I EP R  DKP  +P++DV+ I G GTV  GR E G L
Sbjct:   53 IDSAPEERQRGITINISHVEYETPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLAKQVGVPYLLVALNKSDMVD---DEEILELVELEVRELLSSQDFDGDNAPVVQVSGLKALEGDEKWVEQIVK--------LMEAVDESIPEPVRDKDKPFLMPVEDVFTITGRGTVVTGRAERGTL 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_BRUSU (Elongation factor Tu OS=Brucella suis GN=tufA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 81/228 (35.53%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   43 FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVSL 720
            FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G  V       TT+ ++
Sbjct:   39 FKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKATTKTTV 253          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_BRUSI (Elongation factor Tu OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 81/228 (35.53%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   43 FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVSL 720
            FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G  V       TT+ ++
Sbjct:   39 FKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSAIAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKATTKTTV 253          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NOCSJ3.405e-2734.60Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_LACLS3.405e-2737.86Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM3.405e-2737.86Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA3.405e-2737.86Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_HELMI3.405e-2736.04Elongation factor Tu OS=Heliobacterium modesticald... [more]
EFTU_EUBE23.405e-2736.59Elongation factor Tu OS=Eubacterium eligens (strai... [more]
EFTU_CORDI3.405e-2736.41Elongation factor Tu OS=Corynebacterium diphtheria... [more]
EFTU_CLAMS3.405e-2737.86Elongation factor Tu OS=Clavibacter michiganensis ... [more]
EFTU_BRUSU3.405e-2735.53Elongation factor Tu OS=Brucella suis GN=tufA PE=3... [more]
EFTU_BRUSI3.405e-2735.53Elongation factor Tu OS=Brucella suis (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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