DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:218..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_PEDPA (Elongation factor Tu OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  +  + VP +    +   EGD   E+           ++D +D I+E    P+R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:   50 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAHQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDFPGDDVPVLRGSALKALEGDAEQEK----------VIMDLMDTIDEYIPTPERSTDKPFLMPVEDVFTITGRGTVASGRIDRGEIKVG 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_MACCJ (Elongation factor Tu OS=Macrococcus caseolyticus (strain JCSC5402) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 78/220 (35.45%), Postives = 116/220 (52.73%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVS 717
            +D    E+ERGITI+ +  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK+D       +   + +  EV   L +  +  + VP +  S  +    +E   +    K   L+DA+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GLT E S
Sbjct:   50 IDNAPEEKERGITINTSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRNVGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGVEEYED----KIMELMDAVDEYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGEEVEI--IGLTEEPS 253          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 79/219 (36.07%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   19 AAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            A E   ++F Y  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D           D +  EV   L + G+  +  P V  S  +     + +  +   K   L+  +D  I  P+RP+DK   +P++DV+ I G GTV  GRVETG LK G
Sbjct:   37 AKEGKAKAFNYEEI-DKAPEEKERGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEYIVVFLNKADQVD---DPELIDLVEMEVRELLNEYGFPGDDTPIVVGSALKALQNPDDAEAIKPIK--DLMAEVDAYIPTPERPTDKAFLMPIEDVFTITGRGTVATGRVETGTLKVG 242          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPN (Elongation factor Tu OS=Chlamydia pneumoniae GN=tuf PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 79/228 (34.65%), Postives = 121/228 (53.07%), Query Frame = 1
Query:   40 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTE 711
            SF+    +D    E+ RGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY  +  P +    +   EGD N IE+   L       +    DNI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K    V     G T E
Sbjct:   43 SFRDYSSIDNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKVDMISQEDAEL-IDLVEMELSELLEEKGY--KGCPIIRGSALKALEGDANYIEKVREL-------MQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLGETKE 253          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPD (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   +GD   E+S          L+DA+D  I EP R  DKP  +P++DV+ I G GTV  GR+E G +K
Sbjct:   50 IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVYLNKVDIADPEL----IELVELELRELLTEYNFPGDDIPIIKGSALKALDGDLEGEKSI-------MELMDAVDEFIPEPLRDIDKPFLMPVEDVFSISGRGTVGTGRIERGRIK 237          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_ACIC1 (Elongation factor Tu OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 84/212 (39.62%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK----EVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +DK   ER RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QT+EH LLA  +GV  ++   NK D           +EI++    EV   L    +  + VP V +S     EGD    +S  LD      LL A D+ I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   52 IDKAPEERARGITISIAHVEYQTEKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTKEHVLLARQVGVPYIVVALNKADVVDD-------EEILQLVELEVRELLNSYEFPGDDVPVVRVSALKALEGDPKWTQSI-LD------LLKACDDYIPEPVREIDKPFLMPIEDVFTITGRGTVVTGRVERGVVKVG 242          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU2_RHORT (Elongation factor Tu 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 77/225 (34.22%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   13 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF----EGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            K  AE    +F+    +DK   ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  + +P +  S      + D  +     L+      L+ A+D+ I +P+RP DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   34 KVLAEAGGATFQAYDQIDKAPEERARGITISTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DEELLELVELEVRELLTSYDFPGDDIPIIKGSALAALEDSDQKLGHDAILE------LMKAVDDYIPQPERPKDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 242          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_FRATW (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=cysN PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 81/226 (35.84%), Postives = 118/226 (52.21%), Query Frame = 1
Query:   52 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG-YNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSG-LTTEVSLL 723
            A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G      + FVPIS  +GDN++ +S  + W++G  L+  L+ I      +D+  R P+Q V +         G + +G  K G  +   PSG +TT  S+L
Sbjct:   76 ALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHSFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAGSLQIPDIRFVPISALDGDNVVSKSPKMPWFRGSPLMHYLETIKIDYAYTDE-FRFPVQLVCRPNSEFRGFQGTIVSGSAKIGDTIRVMPSGKITTIKSIL 288          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_THELT (Elongation factor Tu OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +DK   E+ RGITI+I   ++++ K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  M+   NK+DA      +   D +  EV   L K  +  +++P +  S      +     N   YK    L+DALD+ I EP R  DKP  + ++DV+ I G GTV  GR+E G ++PG
Sbjct:   50 IDKAPEEKARGITINITHVEYQSEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMVVFLNKVDAVD---DQELVDLVEMEVRDLLTKYEFPGDEIPVIRGSALLA--LEANDPNDAAYKPIQELIDALDSYIPEPVREVDKPFLMAVEDVFSITGRGTVATGRIERGKIRPG 243          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPW (Elongation factor Tu OS=Synechococcus sp. (strain WH7803) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 73/206 (35.44%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG +  +   E    +D      L+ A+D NI EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G
Sbjct:   50 IDGAPEERERGITINTAHVEYETDTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLSSYDFPGDDIPVVQVSGLKAIEGEAEWEAKID-----ELMQAVDANIPEPEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVG 240          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PEDPA9.907e-2736.02Elongation factor Tu OS=Pediococcus pentosaceus (s... [more]
EFTU_MACCJ9.907e-2735.45Elongation factor Tu OS=Macrococcus caseolyticus (... [more]
EFTU_CLOAB9.907e-2736.07Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_CHLPN9.907e-2734.65Elongation factor Tu OS=Chlamydia pneumoniae GN=tu... [more]
EFTU_CHLPD9.907e-2736.89Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_ACIC19.907e-2739.62Elongation factor Tu OS=Acidothermus cellulolyticu... [more]
EFTU2_RHORT9.907e-2734.22Elongation factor Tu 2 OS=Rhodospirillum rubrum (s... [more]
CYSN_FRATW9.907e-2735.84Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
EFTU_THELT1.294e-2637.86Elongation factor Tu OS=Thermotoga lettingae (stra... [more]
EFTU_SYNPW1.294e-2635.44Elongation factor Tu OS=Synechococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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