DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:218..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 76/224 (33.93%), Postives = 113/224 (50.45%), Query Frame = 1
Query:   13 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            K  AE    +F     +DK   E+ RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   34 KILAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_BORAP (Elongation factor Tu OS=Borrelia afzelii (strain PKo) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 78/223 (34.98%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   22 AEMNK--RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            +++NK  ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E        K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:   37 SKLNKDAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPEATKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLPM (Elongation factor Tu 2 OS=Wolbachia pipientis wMel GN=tuf2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +DK   ER+RGITI  A  +++T K +   +D PGH D++KNMI G +Q D A+L++    G          QTREH LLA  +GV  ++   NK D           D +  EV   L K G+  ++VP V    +   E D+      ++D      L++ LD  +  P RP D P  LP++DV+ I G GTV  GR+E G +K G
Sbjct:   45 IDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMP-------QTREHILLAKQVGVGYIVVYINKADVA----DADMIDLVEMEVRELLSKYGFPGDEVPVVVGSALKALEDDSSEYGKKSID-----KLMEKLDEYVAVPPRPVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKTG 236          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLPM (Elongation factor Tu 1 OS=Wolbachia pipientis wMel GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +DK   ER+RGITI  A  +++T K +   +D PGH D++KNMI G +Q D A+L++    G          QTREH LLA  +GV  ++   NK D           D +  EV   L K G+  ++VP V    +   E D+      ++D      L++ LD  +  P RP D P  LP++DV+ I G GTV  GR+E G +K G
Sbjct:   45 IDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMP-------QTREHILLAKQVGVGYIVVYINKADVA----DADMIDLVEMEVRELLSKYGFPGDEVPVVVGSALKALEDDSSEYGKKSID-----KLMEKLDEYVAVPPRPVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKTG 236          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU1_RHORT (Elongation factor Tu 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 78/225 (34.67%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   13 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF----EGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            K  AE    +F+    +DK   ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  + +P V  S      + D  +     L+      L+ A+D+ I +P+RP DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   34 KVLAEAGGATFQAYDQIDKAPEERARGITISTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DEELLELVELEVRELLTSYDFPGDDIPIVKGSALAALEDSDPKLGHDAILE------LMKAVDDYIPQPERPKDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 242          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_STRPZ (Elongation factor Tu OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+     ++E  + +D Y           I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_STRP8 (Elongation factor Tu OS=Streptococcus pyogenes serotype M18 GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+     ++E  + +D Y           I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_SOLUE (Elongation factor Tu OS=Solibacter usitatus (strain Ellin6076) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 75/217 (34.56%), Postives = 115/217 (53.00%), Query Frame = 1
Query:   34 KRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            K  F+    +D    E+ RGITI +A  ++ET K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK+D           D +  EV   LK   +  + +P V +S      G+   E++ +        L++A+D+ I  P+R  DKP  +P++D++ I G GTV  GR+E G+ K G
Sbjct:   42 KNKFRSFDSIDNAPEEKARGITIAVAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAIVVVAATDGPMP-------QTREHILLARQVGVPYIVVAMNKVDMVD---DSELLDLVELEVRELLKSYQFPGDDLPVVRVSALGALNGEPQWEKTVD-------ELMEAVDSYIPMPERAIDKPFIMPIEDIFSIQGRGTVVTGRIERGICKVG 241          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLE (Elongation factor Tu OS=Mycobacterium leprae GN=tuf PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 80/206 (38.83%), Postives = 114/206 (55.34%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W +  T L+DA+D +I  P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:   52 IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGD--------AKWVESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLB (Elongation factor Tu OS=Mycobacterium leprae (strain Br4923) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 80/206 (38.83%), Postives = 114/206 (55.34%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W +  T L+DA+D +I  P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:   52 IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGD--------AKWVESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BRASB1.294e-2633.93Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BORAP1.294e-2634.98Elongation factor Tu OS=Borrelia afzelii (strain P... [more]
EFTU2_WOLPM1.294e-2636.06Elongation factor Tu 2 OS=Wolbachia pipientis wMel... [more]
EFTU1_WOLPM1.294e-2636.06Elongation factor Tu 1 OS=Wolbachia pipientis wMel... [more]
EFTU1_RHORT1.294e-2634.67Elongation factor Tu 1 OS=Rhodospirillum rubrum (s... [more]
EFTU_STRPZ1.690e-2635.71Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP81.690e-2635.71Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_SOLUE1.690e-2634.56Elongation factor Tu OS=Solibacter usitatus (strai... [more]
EFTU_MYCLE1.690e-2638.83Elongation factor Tu OS=Mycobacterium leprae GN=tu... [more]
EFTU_MYCLB1.690e-2638.83Elongation factor Tu OS=Mycobacterium leprae (stra... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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