DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.901e-34
Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           G+SIYGS+F DENF  K  GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK I   GS SG+T+K +VI DCGQLS
Sbjct:  102 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.095e-34
Identity = 70/105 (66.67%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           G SIYGS+F DENF  K  GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK I   GS SG+T+K +VI DCGQLS
Sbjct:  102 MCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.135e-33
Identity = 71/105 (67.62%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYG KF DE FV K   PG+LSMANAGP TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAI KVG+ +G T+K V + DCGQLS
Sbjct:   68 MCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.936e-33
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+ + GS +G+T+K + I DCGQL
Sbjct:   61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPIF_RAT3.901e-3466.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE5.095e-3466.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYPH_MAIZE1.135e-3367.62Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIA_PONPY1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE1.936e-3364.42Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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