DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.893e-29
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESI+G KF DENF  K  GPG+LSMAN G  TNGSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAI   GS  G  + P VI DCG++
Sbjct:   83 ESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.779e-29
Identity = 62/89 (69.66%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG+KF DENF  K  GPG LSMANAGP TNGSQFF+CT  T WLDG HVVFGQV +GM VVK I K+GS SG   K V I DCG+L
Sbjct:  101 ESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 6.446e-29
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  315 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNK 596
            MCQ           G+SIYGS+F DENF  K  GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK I   GS SG+T+K
Sbjct:  104 MCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 8.418e-29
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG+KF DENF  K  G GILSMANAG  TNGSQFF+CT KT WLD KHVVFG+VVEG+DVVK I   GS SG+T+K +++ + G L
Sbjct:  124 MCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.436e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF  +  G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +  VGS SG+  +PV+I  CG+L
Sbjct:  169 MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.199e-28
Identity = 60/104 (57.69%), Postives = 73/104 (70.19%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYG KF DENF  +  G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +  VGS SG+  +PV I  CG+L
Sbjct:   75 MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.308e-28
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  288 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQ 596
            MCQ           G+SIYG KF DENF+ K  GPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ I   GS  G+  + V+I DCG+
Sbjct:  197 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.216e-27
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  288 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQ 596
            MCQ           G+SIYG KF DENF+ K  GPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ I   GS  G+  + V+I DCG+
Sbjct:  197 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.216e-27
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = -2
Query:  288 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQ 596
            MCQ            +SIYG KF DEN + K  G GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+   G  + +T+K + I DCGQ
Sbjct:   61 MCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.588e-27
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  288 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQ 596
            MCQ           G+SIYG KF DENF+ K  GPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ I   GS  G+  + V+I DCG+
Sbjct:  197 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CYP2_CAEEL2.893e-2967.42Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYP1_CAEEL3.779e-2969.66Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIF_BOVIN6.446e-2965.96Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_DROME8.418e-2959.62Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIE_SCHMA1.436e-2857.69Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_SCHJA3.199e-2857.69Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIE_HUMAN9.308e-2856.31Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_PONAB1.216e-2756.31Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PAL4A_HUMAN1.216e-2756.31Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIE_MOUSE1.588e-2756.31Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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