DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 6.903e-23
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTN--KPVVIXDCGQL 551
            +SIYG +F DENF  K  GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +     + GR    K V I DCG++
Sbjct:  116 KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.903e-23
Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSS--SGRTNKPVVIXDCGQL 548
            SIYGSKF DE+F  K  GPG+LSMANAGP TNGSQFF+CT  T WLD +HVVFG V+EG+DVVK +    +S       KP  I   G+L
Sbjct:  155 SIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.538e-22
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKP---VVIXDCGQL 551
            +SIYG++FADENF  +   PG+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V+EGMDVV  I    + +G  +KP   VVI DCG L
Sbjct:  106 KSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIE--NTPTGSRSKPSVDVVIADCGLL 195          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.008e-22
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSS-GRTNKPVVIXDCGQL 551
            +SIYG +F DENF  K  GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +    + S  +  K V+I D G++
Sbjct:  116 KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.008e-22
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG  F DENF  K  G G+LSMANAGP TNGSQFF+    T WLDG H VFGQ+V+G  V+  + + GS SG  +  + I DCG+L
Sbjct:   86 ESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.623e-22
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 551
            ESIYG KF DENFV K   P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G  VV+A+  + + S R  +  VI  CG+L+
Sbjct:   83 ESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.623e-22
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSG-RTNKPVVIXDCGQL 548
            SIYG +F DENF  +  GPG LSMANAG  TNGSQFF+ TAKT WLDGKHVVFG+++EGMDVV+ I      +G R  + VVI + G +
Sbjct:   99 SIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.474e-22
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 551
            ESIYG KF DENF  K   P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  +V+ I  + + + +    V I DCG+LS
Sbjct:   91 ESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.843e-22
Identity = 57/106 (53.77%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNK-PVVIXDCGQLS 596
            MCQ           GESIYG KF DE F      P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG+V++G  VV+ I    +++G   K PVVI DCGQLS
Sbjct:   69 MCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.843e-22
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI-XKVGSSSGRTNKPVVIXDCGQL 548
            SIYG +F DENF  +  G G LSMANAGP TNGSQFF+ T KT WLDGKHVVFG+VVEGM++V+ I  +   S  R  K + I  CG +
Sbjct:  110 SIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPIB_BOVIN6.903e-2359.34Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
CYPB_VICFA6.903e-2358.89Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB1_RHIOR1.538e-2260.87Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
PPIB_MOUSE2.008e-2257.78Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
CYP6_RHIOR2.008e-2256.18Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_RHIOR2.623e-2258.89Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
CYP6_CAEEL2.623e-2259.55Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPID_ASPFU4.474e-2255.56Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_AMAMU5.843e-2253.77Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIB_SCHMA5.843e-2258.43Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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