DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.632e-22
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 551
            ESIYG KF DENF  K   P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ +  + + + +  K V I +CG+L+
Sbjct:   85 ESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.967e-22
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            +SIYG KFADENF  K    G+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V   + M +V+ I  +GSSSGRT+  V I + G L
Sbjct:   75 KSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.967e-22
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNK-PVVIXDCGQL 548
            SIYGSKF DENF  K  GPG+LSMANAG  TNG QFF+  AKT++LD KHVVFG+V++GM  V+ I  V + +    K P+V+  CGQL
Sbjct:   95 SIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.700e-21
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            +CQ           G SIYG KF DENF  K  GPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD VK I   GS  G  ++ ++I +CGQ+
Sbjct:  982 VCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.700e-21
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = -2
Query:  282 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSG-RTNKPVVIXDCGQLS 548
            SIYG KFADENF  K  G G LSMANAG  TNGSQFF+ T KT WLDG+HVVFG+++EGMDVV+ I +     G R  + V+I   G ++
Sbjct:  102 SIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.221e-21
Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSK-FADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKP---VVIXDCGQL 596
            MCQ              IYG+K FADENF+ K   PG+LSMANAGP TNGSQFF+ T  T +LDGKHVVFG+VV+GMDVVK +    +     + P   VVI  CG++
Sbjct:   75 MCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.221e-21
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 551
            ESIYG KF DENF  K   P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ I  + + + +    V I +CG+L+
Sbjct:   86 ESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.221e-21
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSS-GRTNKPVVIXDCGQL 548
            SIYG +F DENF  K  G G LSMANAGP TNG+QFF+ T +  WLDGKHVVFG+VVEGM VV+ I  + + S  R  K V I +CG +
Sbjct:  110 SIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.900e-21
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = -2
Query:  285 SIYGS-KFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 548
            +IYG+ KF+DENF  +   PG+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQV++GMD+V+ I    ++  + N+ VVI  CG++
Sbjct:   95 TIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.788e-21
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            +CQ           G+SIYG KF DENF  K  GPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD V+ I   GS  G  ++ + I +CGQL
Sbjct: 2950 ICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPID_ASPOR7.632e-2254.44Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIA_STRCH9.967e-2259.34Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
CYP11_CAEEL9.967e-2258.43Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
RBP2_BOVIN1.700e-2150.96E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
CYP5_CAEEL1.700e-2157.78Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIH_NEUCR2.221e-2151.85Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPID_EMENI2.221e-2154.44Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPIB_SCHJA2.221e-2158.43Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIH_EMENI2.900e-2152.81Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
RBP2_MOUSE3.788e-2150.96E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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