DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:927..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK+N N EK FL LA  +
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK+N N EK FL LA  +
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK+N N EK FL LA  +
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 556
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N    Y E SAK + N    F    R++
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          ++ P V+ GNKVD ++RQV  +  Q       N  Y E SAK + N    F    R++
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 556
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N    Y E SAK + N    F    R++
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 51/165 (30.91%), Postives = 89/165 (53.94%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCEN----IPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 550
            K++I+GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    +++++  WH + L R         P +L GNKVD+    +R V  K+       K N+ Y+E SAK +YN +  FL + +
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITK 174          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 2
Query:   62 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 604
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 2
Query:   62 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 604
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 595
            FK++++GD GTGK++ + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I ++DVT +L++ ++  TW +D+ +    N+  +L GNK+D+   +V +     H   + N+ Y E SAK++ N EK F  +A+ L      +   +PA
Sbjct:    8 FKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPA 182          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_PONAB1.556e-1932.92Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.556e-1932.92Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.556e-1932.92Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB9B_PONAB2.033e-1932.32Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_MOUSE2.033e-1932.32Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN2.033e-1932.32Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB7_ARATH2.033e-1930.91Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB4A_HUMAN2.033e-1932.61Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN2.033e-1932.61Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB1_THEPA2.033e-1931.43Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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