DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:927..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVK-NRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++G +R+ Y   G+  ++++ +T+R +++ V T+H+ + RV +    P+V+  NK D++  RQV+  +     K+ N Q  E SAK   N ++ F+ + R +
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDEEVALLDVL-----------DTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAFIAVVRAI 170          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASEF_HUMAN (RAS and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 49/169 (28.99%), Postives = 83/169 (49.11%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQ------YYEISAKSNYNFEKPFLYLARKL 556
            ++K+V+ GD   GK++F+ R    EF +    T+GV+        +  +     WDTAGQE+F  +   Y+      ++++DVT   ++ N+  W  D+      E +PI+L GNK D+++      Q  V  H  + L       + E SAK   N  +  L+LAR++
Sbjct:  541 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW-VDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 708          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 50/163 (30.67%), Postives = 88/163 (53.99%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++PI+L GNK D+++ +V  K   Q    +  +  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 49/161 (30.43%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 49/161 (30.43%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 49/161 (30.43%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 44/163 (26.99%), Postives = 85/163 (52.15%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 535
            + Q  DY  FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ +V   +       +L  +++E SAK N N ++ F
Sbjct:   15 ADQNFDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 44/163 (26.99%), Postives = 85/163 (52.15%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 535
            + Q  DY  FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ +V   +       +L  +++E SAK N N ++ F
Sbjct:   15 ADQNFDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 58/199 (29.15%), Postives = 92/199 (46.23%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAGD-----------PNLHFVESPALAPPEVQ 616
            FK++++G+ G GKT+ +KR++   F + Y  TIGV+  +  L++ +    +R   WD AGQE+FG +   YY     A ++FD++   T+  V  W  DL           IP VL  NK D K  N Q  ++   F +      ++E SAK N N ++   +L   +  +             +  VE P    P  Q
Sbjct:   24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRT-LVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSEEIDLDRIKLVEEPPTTKPRSQ 221          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 49/156 (31.41%), Postives = 79/156 (50.64%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 526
            + K+V++GD   GKT+ V R  +G+F  K+  TIG       +EV   D  T   +I    WDTAGQE++  L   YY     A+I+F++    + +   TW +DL    +   +++ GNK D+   +   +       + L Y  +SAK+ YNF+
Sbjct:    4 TIKVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTE-KRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRAQGTQVIIVGNKYDLVCEEHSGEVTIPAELQGLPYVAVSAKTGYNFD 158          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_CRYNE5.181e-1530.81Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RASEF_HUMAN5.181e-1528.99RAS and EF-hand domain-containing protein OS=Homo ... [more]
RAP1B_CYPCA5.181e-1530.67Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RALA_SAGOE5.181e-1530.43Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT5.181e-1530.43Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE5.181e-1530.43Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RAB3D_MOUSE5.181e-1526.99Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN5.181e-1526.99Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB32_MOUSE5.181e-1529.15Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
YPT10_YEAST6.767e-1531.41GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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