DC900180

Overview
NameDC900180
Unique NameDC900180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1582 contig Csv1_Contig1582:410..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 1433B_SHEEP (14-3-3 protein beta/alpha (Fragments) OS=Ovis aries GN=YWHAB PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.082e-31
Identity = 71/120 (59.17%), Postives = 83/120 (69.17%), Query Frame = 2
Query:   50 YKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGE 409
            YKMKGDY+RYL+E    D+++    +S +           E+ PTHPIRLGLALNFSVFYYEILNSP            EAIAELD+LNEESYKDSTLIMQLLRDNLTLWTS+   + G+
Sbjct:   84 YKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSP------------EAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD 191          
BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.259e-28
Identity = 72/145 (49.66%), Postives = 88/145 (60.69%), Query Frame = 2
Query:    5 HLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGEQSKGDEVQAE 439
            H +P + SGE+ VF+YKMKGDYYRYLAEF    ++K A D SL                        A  FS+   EI+NSPERA  +AKQA DEA AE++S   E YKDS L+MQLL++NL LWTS+L   GGE SK D+V  E
Sbjct:  105 HCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQAWPC----------------AQLFSLL--EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL--TGGETSKDDDVVME 229          
BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 2
Query:  236 ILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGEQSK 418
            ILNSP+RAC+LAKQAFDEAI+ELDSL EESYKDSTLIMQLL DNLTLWTSD  E+GG++ K
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNEDGGDEIK 61          
The following BLAST results are available for this feature:
BLAST of DC900180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433B_SHEEP1.082e-3159.1714-3-3 protein beta/alpha (Fragments) OS=Ovis arie... [more]
14338_ORYSJ3.259e-2849.66Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]
1433X_MAIZE7.775e-2281.9714-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionDC900180 VSS Citrus sinensis cDNA clone VS28206 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900180 ID=DC900180; Name=DC900180; organism=Citrus sinensis; type=EST; length=596bp
TGAACACCTAATCCCATCCTCCACATCTGGAGAATCAACCGTGTTTTACT
ATAAGATGAAAGGAGATTATTACCGTTACCTAGCTGAGTTCAAAGGTGCT
GATGATCGTAAGGAAGCTGCAGATCATTCACTTAAGGCTTACGAGGCTGC
TACAGCTGCAGCAGCCTCAGAGTTACCCCCAACTCATCCAATCAGACTTG
GCCTGGCTCTTAACTTTTCTGTTTTCTACTATGAGATTTTGAACTCACCT
GAGAGGGCTTGCCACCTGGCTAAACAAGCATTTGATGAGGCTATTGCTGA
ACTTGATAGCCTTAATGAAGAGTCCTACAAGGACAGCACCCTTATTATGC
AGCTTCTTCGGGATAATCTCACCTTGTGGACCTCGGATCTACCGGAGGAG
GGAGGTGAGCAATCTAAAGGTGATGAAGTTCAAGCAGAGAGCTAGCCGGG
GATGCATGAGCATCAGGAGGAGAAATTGTGCTAGTTGGGTTCTAATATCT
ATTAGTATTAGTAGTATAGGGATTGAAAGAACATTTGGCTTGTATAATAC
TTATTACATGTTTTTAATTTCAGGTTGTTGTGCTATTTTCTGTTTA
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