CN186126

Overview
NameCN186126
Unique NameCN186126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12816 contig Csv1_Contig12816:345..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186126 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 55/174 (31.61%), Postives = 98/174 (56.32%), Query Frame = -3
Query:  289 RNKKISAGVLGGATAIWVXXXXXXXXXXXLVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 804
            +NKK S  +LG  T IW             +C  L++ + +  +WS   +S  I   PP I ++ I E     L + + + I + +    +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ +   + K+  ++KK    F++KV++KIP++
Sbjct:   38 KNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLY----DISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKA 207          
BLAST of CN186126 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  277 RNKKISAGVLGGATAIWVXXXXXXXXXXXLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL-KDK 804
            R + +S GV+  +T  W+           +    L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +Y KY+ +VD         +   Y + D  V+S++  SL KDK
Sbjct:   48 RRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224          
BLAST of CN186126 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  271 RNKKISAGVLGGATAIWVXXXXXXXXXXXLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 804
            RN+  +  +L  +T  W             V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN    +  +I   R+  + L V   LW +S VG+  N LTL YI  +L  + P++YEKY+D +D   EK  +  K     F   +  K P  +  +KK
Sbjct:   29 RNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID---EKVNSTSK-----FVRNISRKFPLPINKEKK 198          
BLAST of CN186126 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 57/173 (32.95%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  283 KISAGV-LGGATAIWVXXXXXXXXXXXLVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLK 795
            KI++G+ L  AT  W            L+C  L++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V   T+PV+Y ++++ +DSF  K   E      VF  +V+SKIPR+ K
Sbjct:   22 KINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHLL----MLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPRAPK 189          
BLAST of CN186126 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 43/143 (30.07%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  376 RNKKISAGVLGGATAIWVXXXXXXXXXXXLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 804
            R K +S G++    A W+           L+   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL +   +++ TVP  YE+YED +
Sbjct:   31 RKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
The following BLAST results are available for this feature:
BLAST of CN186126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLN_ARATH1.756e-2131.61Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH8.158e-1927.68Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH3.427e-1730.90Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH7.635e-1732.95Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH9.972e-1730.07Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186126 ID=CN186126; Name=CN186126; organism=Citrus sinensis; type=EST; length=806bp
TTTTTGTACAACCACTCTAATTGATAAAAAACATAATACCACATCAGCAT
AATACTCACACATATCCATGCAAATAGCTACGACATATGTAGCATAAACA
AGTACAAAATATCCATATTGTGAACCCAACCACCTCTAGAACAACAAAGG
AATAAAACAGGGTTCAAGCCAACACTGGATAACAGTTTCATAACACCTAG
ATAAAATACTTTCTACCAAATGTGTGTCAGAACCTAGCAAAGACCGCAAA
TTTATACCACCATTCTAAGCCTTCTTCTTGTCCTTCAATGACCTTGGTAT
CTTACTTAAGACCTTGGCATCAAAGACTGCATACTGCTTCTTGATCTCAG
CCCATGCCTTCTCAGAAAATGAATCCACCCGATCCTCATACTTCTCATAT
ATCACAGGCACAGTGTGAAGCAGTACAAAAACTATGTAGAACAAGGTCAA
GAAATTGCACCAGCTCCCCACAATCGACACAACCCACAAGCCAGCAATCA
CCGAGAGAAACTTCTTCAGATCTCTTCCAGATGCTATTTCCCTCAGAAGA
GGGAAGGCCCTATTGATCTCAAACCTAAGTGCAGAGGCCAACTGTAAAAC
TGGTTCCTCAGGGATATATACTTCTGGAATGCGTGGTGGAGACTTGTTAA
TGAAGGTGGAAGCATTAGACCACAAGAAAAGCACCGCAAGTGCAACAATC
AGGCAGTGACAGACAAGAGTTAGAAGGTGGTACTCAAGCAATTCAAAAAG
AACCCATATTGCAGTAGCCCCACCAAGTACTCCTGCTGAAATCTTCTTGT
TCCTCC
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