CN186121

Overview
NameCN186121
Unique NameCN186121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:64..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186121 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 49/145 (33.79%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  282 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVV 698
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV
Sbjct:    9 EVAVTKSILKSTFDMWMDLIDVDVVIVGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVV 147          
The following BLAST results are available for this feature:
BLAST of CN186121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
THI4_METMP5.034e-1133.79Putative thiazole biosynthetic enzyme OS=Methanoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186121 ID=CN186121; Name=CN186121; organism=Citrus sinensis; type=EST; length=707bp
CGTTATCAAATCAAATTACTTCTCATTATCAAACTTCTAACCTTCAGGGG
AAGGAGGGGTAAAAAAAAAAAACCATGGCAGCCATGGCTTCTACAGCTTT
CGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCCTTTC
ATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAATCT
TCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGA
CTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTG
AAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACACTGAT
GTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCT
CAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAGCC
CCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGTTGTG
CGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGA
GCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTA
TAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTG
GCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGAC
CAACTGG
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