CN186120

Overview
NameCN186120
Unique NameCN186120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:808..1579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 53/116 (45.69%), Postives = 65/116 (56.03%), Query Frame = -3
Query:  474 DPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 770
            DPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  207 DPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-16
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = -3
Query:  468 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 770
            DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  154 DPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  465 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 770
            DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  154 DPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 48/101 (47.52%), Postives = 58/101 (57.43%), Query Frame = -3
Query:  468 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 770
            DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  154 DPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  462 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 770
            DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  153 DPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  462 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 770
            DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  154 DPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  465 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 770
            DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  161 DPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = -3
Query:  468 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 770
            DP  + AK VV + GHD    +   +++  + ++  +PG K+    +AE+  V  T  V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  165 DPLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = -3
Query:  468 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 770
            DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  164 DPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
BLAST of CN186120 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = -3
Query:  468 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 770
            DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE   V  + EV PG+   GM V EI   PRMGP FGAM++SG+K A   +K+L
Sbjct:  160 DPLFISAKAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
The following BLAST results are available for this feature:
BLAST of CN186120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
THI4_YEAST1.585e-1645.69Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO2.071e-1647.52Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU6.024e-1646.08Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.342e-1547.52Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO5.100e-1544.66Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR8.699e-1538.83Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_AERPE8.699e-1544.12Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_SULTO3.306e-1437.62Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULAC4.317e-1439.60Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METS57.364e-1439.60Putative thiazole biosynthetic enzyme OS=Metallosp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186120 ID=CN186120; Name=CN186120; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTGATCTTATCACATCAGCACTTTCCCATTGCCTTTTGG
CTCAAGTTATAAACATACAAAGCAAAGAAAAGGGCCCTGCCCAAGGGCAG
TCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAAATTCA
CCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAA
TTAAAGGTTCGATGATGGACCGGAAACAAACACTTTATTCACAAAACCTC
ACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAAT
ACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTG
ATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAG
CTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCT
AATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTG
CCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCAT
CAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCC
CTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTT
CATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTC
CAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTC
GCTTCCATTACATTGGGATCCA
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