DC900174

Overview
NameDC900174
Unique NameDC900174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8201 contig Csv1_Contig8201:73..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYR5_DICDI (Uridine 5'-monophosphate synthase OS=Dictyostelium discoideum GN=pyr56 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.471e-32
Identity = 68/141 (48.23%), Postives = 91/141 (64.54%), Query Frame = 1
Query:   10 KLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            KLF +M  K++NL +AAD+    +LL +AE +G EIC+LKTHVDI+ ++  +F   L+ IA KHNFLIFEDRKFADIGNTV  Q E G++ I  WAD++  H ++G  IVD                A+MSS G+L  GD+
Sbjct:  241 KLFTLMSSKKTNLAVAADLTDKQQLLDLAESIGSEICVLKTHVDIIDNYDEEFIKSLKCIAAKHNFLIFEDRKFADIGNTVKYQFENGVYKISKWADMVTVHGVAGSSIVDGFKSGLKEYGSGLLLLAQMSSKGSLCVGDY 381          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_RHIPU (Orotidine 5'-phosphate decarboxylase OS=Rhizomucor pusillus GN=PYR4 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.921e-32
Identity = 69/142 (48.59%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            + LF++M +K++NL +AADV T  ELL IA+  GP IC+LKTH+DI+ DF  D  ++L  +A+KH+FL+FEDRKFADIGNTV  Q   G++ I  WA I NAH + G GI+                 AEMSS G L KG +
Sbjct:   20 KALFELMERKQTNLSIAADVTTKKELLHIADACGPYICILKTHIDIIDDFDEDLVAQLCELAKKHDFLLFEDRKFADIGNTVKHQYGKGVYKIASWAHITNAHTVPGEGIITGLREVGLPLGRGLLLLAEMSSKGALTKGSY 161          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_SACEX (Orotidine 5'-phosphate decarboxylase OS=Saccharomyces exiguus GN=URA4 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.508e-32
Identity = 73/145 (50.34%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   10 KLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSK-LRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV---DXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            KL ++M  K++NLC + DV T AELL + ++VGP ICLLKTHVDIL DF+ +   K L+ +A K+NFLIFEDRKFADIGNTV +Q   G++ I+ WADI NAH ++G GIV                    AE+SS G+LA G++
Sbjct:   20 KLLRIMASKKTNLCASLDVRTTAELLSLVDQVGPYICLLKTHVDILDDFSMEGTVKPLKELAAKYNFLIFEDRKFADIGNTVKLQYSSGVYKIVQWADITNAHGVTGSGIVKGLKEAAQENSDEPRGLLMLAELSSKGSLAHGEY 164          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_SCHCO (Orotidine 5'-phosphate decarboxylase OS=Schizophyllum commune GN=URA1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.276e-32
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDFRAA 441
            + L + M +K+SNL ++ DV  +A+LL I + VGP ICL+KTHVD++ DF     +KL+A+AEKH+FLIFEDRKFADIGNTV +Q   G+  I  W+ I NAH + GP I+                 AEMS+ G+LA G +  A
Sbjct:   22 KALLETMERKKSNLSVSVDVVKSADLLAIVDTVGPYICLIKTHVDVVEDFDSSLVTKLQALAEKHDFLIFEDRKFADIGNTVALQYSSGVHKIASWSHITNAHPVPGPSIISGLASVGQPLGRGLLLLAEMSTKGSLATGAYTEA 166          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_USTMA (Orotidine 5'-phosphate decarboxylase OS=Ustilago maydis GN=PYR6 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.588e-32
Identity = 64/145 (44.14%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDFRAA 441
            + L + M +K++NLC++ DV    +LL + E VG  +CL+KTH+DI+ DF  D   +L  ++EKH+FLIFEDRKFADIGNTV++Q   G+  I  W+ I NAH++ GP ++                 AEMSS G L KGD+  A
Sbjct:   22 KALLECMERKQTNLCVSIDVTNKQDLLDVCEAVGRNVCLVKTHIDIVEDFDMDLVHQLTQLSEKHDFLIFEDRKFADIGNTVSLQYSAGVHKIASWSHITNAHLVPGPSVISGLAKVGQPLGRGLLLLAEMSSEGALTKGDYTQA 166          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYR5_DROME (Uridine 5'-monophosphate synthase OS=Drosophila melanogaster GN=r-l PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 7.298e-32
Identity = 68/151 (45.03%), Postives = 97/151 (64.24%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISG----PGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDFRAAGN 447
            ++LF ++  K++NLCLAAD+  A E+L +A+K GP ICLLKTHVDI+ DF+  F + L+A+A++HNFL+ EDRKFADIGNTV++Q   GI+ I  WAD++ AH + G     G+                  AEMS++GNL    ++   N
Sbjct:  247 KRLFNLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKFIADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHTLPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSN 397          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_RHIOR (Orotidine 5'-phosphate decarboxylase OS=Rhizopus oryzae GN=pyrG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 9.531e-32
Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            R L ++M +K++NL +A DV T  EL+ IA+ +GP IC+LKTH+DI+ DF  D   +L+ +A+KH+FL FEDRKFADIGNTV  Q   GI+ I  W+ I NAH + G GI+                 AEMSS G L KG +
Sbjct:   20 RSLLELMERKQTNLSVAVDVTTKKELISIADAIGPYICVLKTHIDIVEDFDADLIQQLQELAKKHDFLFFEDRKFADIGNTVKHQYANGIYKIASWSHITNAHTVPGEGIIKGLAEVGLPLGRGLLLLAEMSSKGALTKGSY 161          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_RHINI (Orotidine 5'-phosphate decarboxylase OS=Rhizopus niveus GN=PYR4 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 9.531e-32
Identity = 67/142 (47.18%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            R L ++M +K++NL +A DV T  EL+ IA+ +GP IC+LKTH+DI+ DF  D   +L+ +A+KH+FL FEDRKFADIGNTV  Q   GI+ I  W+ I NAH + G GI+                 AEMSS G L KG +
Sbjct:   20 RSLLELMERKQTNLSVAVDVTTKKELISIADAIGPYICVLKTHIDIVEDFDADLIQQLQELAKKHDFLFFEDRKFADIGNTVKHQYANGIYKIASWSHITNAHTVPGEGIIKGLAEVGLPLGRGLLLLAEMSSKGALTKGSY 161          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_ZYGBA (Orotidine 5'-phosphate decarboxylase OS=Zygosaccharomyces bailii GN=URA3 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.245e-31
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 1
Query:   10 KLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSK-LRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVD---XXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            KL ++M +K++NLC + DV T  ELL++ + +GP ICL+KTHVDIL DF+ D   K L+ +A KH FLIFEDRKFADIGNTV +Q   G++ I  WADI NAH ++GPGIV                    AE+SS G+LA G++
Sbjct:   20 KLLELMHEKQTNLCASLDVDTTTELLRLVDILGPYICLVKTHVDILSDFSMDGTVKPLKELAAKHKFLIFEDRKFADIGNTVKLQYSSGVYQISQWADITNAHGVTGPGIVQGLKQAAEETTQEPRGLLMLAELSSKGSLAHGEY 164          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_SCHPO (Orotidine 5'-phosphate decarboxylase OS=Schizosaccharomyces pombe GN=ura4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.123e-31
Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            ++L  +M +K+SNL +A D+   +E+L++ +K+GP +C++KTH+D++ DF  D   KL A+ +KH FLIFEDRKFADIGNTV +Q   G++ I  WA I N H + G GI+                 AEMSS G+LA G +
Sbjct:   22 KELLALMEEKQSNLSVAVDLTKKSEILELVDKIGPYVCVIKTHIDVVEDFDQDMVEKLVALGKKHRFLIFEDRKFADIGNTVKLQYASGVYKIASWAHITNCHTVPGEGIIQGLKEVGLPLGRGLLLLAEMSSKGSLATGSY 163          
The following BLAST results are available for this feature:
BLAST of DC900174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PYR5_DICDI1.471e-3248.23Uridine 5'-monophosphate synthase OS=Dictyostelium... [more]
PYRF_RHIPU1.921e-3248.59Orotidine 5'-phosphate decarboxylase OS=Rhizomucor... [more]
PYRF_SACEX2.508e-3250.34Orotidine 5'-phosphate decarboxylase OS=Saccharomy... [more]
PYRF_SCHCO3.276e-3246.90Orotidine 5'-phosphate decarboxylase OS=Schizophyl... [more]
PYRF_USTMA5.588e-3244.14Orotidine 5'-phosphate decarboxylase OS=Ustilago m... [more]
PYR5_DROME7.298e-3245.03Uridine 5'-monophosphate synthase OS=Drosophila me... [more]
PYRF_RHIOR9.531e-3247.18Orotidine 5'-phosphate decarboxylase OS=Rhizopus o... [more]
PYRF_RHINI9.531e-3247.18Orotidine 5'-phosphate decarboxylase OS=Rhizopus n... [more]
PYRF_ZYGBA1.245e-3149.66Orotidine 5'-phosphate decarboxylase OS=Zygosaccha... [more]
PYRF_SCHPO2.123e-3143.66Orotidine 5'-phosphate decarboxylase OS=Schizosacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900174 VSS Citrus sinensis cDNA clone VS28201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900174 ID=DC900174; Name=DC900174; organism=Citrus sinensis; type=EST; length=450bp
ACTGGGAGAAAATTGTTTCAAGTGATGGTGAAGAAGGAGAGTAATTTGTG
TTTGGCTGCTGATGTTGCCACTGCTGCTGAGTTGCTTCAAATTGCCGAGA
AGGTTGGACCAGAGATCTGCTTGTTGAAAACCCATGTCGATATATTGCCT
GATTTCACCCCAGATTTTGGTTCCAAACTTCGTGCGATTGCAGAAAAGCA
TAACTTCCTAATTTTTGAAGATCGCAAGTTTGCGGACATTGGTAACACTG
TGACCATGCAGGCTGAAGGTGGTATATTTTGTATATTGGATTGGGCCGAT
ATAATAAATGCTCACATAATCTCTGGACCGGGAATTGTGGATGGTCTGAA
ATTAAAGGGATTGCCTCGTGGTAGGGGTCTGTTGCTGCTGGCTGAGATGA
GCTCAGCTGGTAACCTAGCAAAGGGAGACTTCAGAGCAGCTGGAAATGCG
back to top