DC900171

Overview
NameDC900171
Unique NameDC900171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5386 contig Csv1_Contig5386:85..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 218.009 bits (554), Expect = 3.432e-56
Identity = 107/203 (52.71%), Postives = 144/203 (70.94%), Query Frame = 3
Query:    3 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMC---DLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            GT G+VI+CKAA+AWEAGKPL IEEVEVAPP+ +EVR++I+ TSLCHTD    ++K +   FP I GHEA GIVES+G GVT+++PGD V+P++   C++C  C S  +N+C     L+       ++ D  SRF+ KGKP+YHF GTSTFS+YTV     +AKI+  A L++VC+L CG STG+GA +N AK   G + A+F
Sbjct:    2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVF 204          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.432e-56
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            T G+VI+CKAAVAWEA KPLVIEE+EV  P  NE+R+KI+ T +CHTD+Y          FP + GHE  GIVESVG GVT+ QPG+ V+P+F  +C EC  C S ++N C     N    VM +  ++RF+ KG+ +  F+GTSTFS+YTV +   VAKI+P+APLD VC+L CG+STGFGA VN AK + G + A+F
Sbjct:    2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVF 199          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.432e-56
Identity = 108/199 (54.27%), Postives = 140/199 (70.35%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAAV WE  KP  IE+VEVAPP+  EVR+K++   +C TD +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C + ESN C    +   RG +  DG  RF+ +GKPI+HF+GTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ VNVAK   G + A+F
Sbjct:    3 TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVF 199          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.483e-56
Identity = 108/199 (54.27%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAAV WE  KP  IE+VEVAPP+  EVR+K++   +C TD +       +PL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C S E N C    ++  RG +  DG  RF+ +GKPI+HFVGTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ VNVAK   G   A+F
Sbjct:    3 TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKSPEGNYCVKNDLSNPRGTL-QDGTRRFTCRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSVCAVF 199          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.646e-56
Identity = 106/199 (53.27%), Postives = 135/199 (67.84%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            T G+ I CKAAVAWEA KPL IE+V VAPP+++EVR+K+  T +CHTD Y          FP I GHE  GIVES+GEGVT+++ GDHV+ ++T EC EC  C S ++N+C  +R    +GVM  DG SRF+ KGK I HF+G STFS+YTV     V  INP A  DK C+L CGI+TG+GA    A  +KG +VA+F
Sbjct:    5 TVGKPITCKAAVAWEAAKPLSIEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEGVTNVKVGDHVIALYTPECGECKFCKSGKTNLCGKIRATQGKGVM-PDGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQKGDNVAVF 202          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.646e-56
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAA+ WE  KP  IEE+EVAPP+ +EVR+KIL T +C +D +        PL P I GHEA G+VES GEGVT L+PGD V+P+F  +C EC  C     N+C    + +  G+M  DG SRF+ KGK I+HF+GTSTF+EYTV H   VA+I+ AAPL+KVC++ CG STG+GA V  AK + G + A+F
Sbjct:    2 TAGKVIKCKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPL-PMILGHEAAGVVESTGEGVTSLKPGDKVIPLFVPQCGECMPCLKSNGNLCIRNDLGSPSGLMA-DGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVEPGSTCAVF 198          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 9.986e-56
Identity = 108/199 (54.27%), Postives = 142/199 (71.36%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++ T +C +D +       TPL P I GHEA GIVES+GEGVT ++PGD V+P+FT +C +C  C   E N C    ++  RG M  DG SRF+ +GKPI+HF+GTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK  +G + A+F
Sbjct:    3 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVF 199          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.703e-55
Identity = 99/199 (49.75%), Postives = 136/199 (68.34%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            T GQ+I+CKAAVAWEAGK L IEE+EV PP+ +EVR+K+ FT +CHTD Y          FP +FGHE  G+VESVGEGV  ++ GD V+ ++T EC+EC  C S ++N+C  +R    +G ++ DG SRF  KGK ++H++G S+FS+YTV     V K+   AP DK C+L CG++TG+GA +N AK  KG  + +F
Sbjct:    3 TEGQIIKCKAAVAWEAGKDLSIEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVF 200          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.906e-55
Identity = 107/199 (53.77%), Postives = 138/199 (69.35%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++   +C +D +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C + ESN C    +   RG +  DG  RF+  GKPI+HFVG STFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK   G + A+F
Sbjct:    3 TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVF 199          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.795e-55
Identity = 108/199 (54.27%), Postives = 138/199 (69.35%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+KI+ T +C +D +        P FP I GHEA G+VESVGEGVT ++PGD V+P+F  +C EC  C S + N+C    I     +M  DG SRF+ KGK I+HF GTSTF+EYTV H   VAKI+ AAPL+KVC++ CG STG+GA +  AK + G + A+F
Sbjct:    2 TAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRVKIIATGICRSDDHVISGVLVMP-FPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSVCLSTKGNLCRKNDIGPASALM-PDGTSRFTCKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVEPGSTCAVF 198          
The following BLAST results are available for this feature:
BLAST of DC900171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
ADH4_HUMAN3.432e-5652.71Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_GADCA3.432e-5653.27Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADH1B_HUMAN3.432e-5654.27Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1B_PAPHA4.483e-5654.27Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
FADH_CANMA7.646e-5653.27S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH1_ALLMI7.646e-5653.27Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH1E_HORSE9.986e-5654.27Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
FADH_PICPA1.703e-5549.75S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH1G_HUMAN2.906e-5553.77Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1_STRCA3.795e-5554.27Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionDC900171 VSS Citrus sinensis cDNA clone VS27V94 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900171 ID=DC900171; Name=DC900171; organism=Citrus sinensis; type=EST; length=656bp
CTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATGGGAG
GCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCACAGAA
AAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACTGATG
TTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCATTTTT
GGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAACTGA
TCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGCAAGG
AATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCTCAGG
ATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGATTCTC
GATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTCAGTG
AATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGCTGCC
CCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTTTTGG
GGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCCATTT
TTGGATTGGGTGCAGNTGGCCTCGCTGCTGCCGAAGGGGCAAGGGTATCA
GGGGCT
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