CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBCM (30S ribosomal protein S17 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 40/81 (49.38%), Postives = 62/81 (76.54%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V +   RPLSK K W + +I++KA++
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSKTKSWTLVKIVEKAKM 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBCH (30S ribosomal protein S17 OS=Vibrio cholerae GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 40/81 (49.38%), Postives = 62/81 (76.54%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V +   RPLSK K W + +I++KA++
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSKTKSWTLVKIVEKAKM 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBC3 (30S ribosomal protein S17 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 40/81 (49.38%), Postives = 62/81 (76.54%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V +   RPLSK K W + +I++KA++
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSKTKSWTLVKIVEKAKM 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THEMA (30S ribosomal protein S17 OS=Thermotoga maritima GN=rpsQ PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE N+C IGD V ++ +RPLSK K W V  I+++
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHPLYKKYVKRTKKYHAHDERNECKIGDVVEIEETRPLSKTKRWRVVRIIQR 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNS9 (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9902) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = -1
Query:  345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569
            +K  VG VVS+KM+K+VVVAV+  F H +Y + V RT+++ AHDE+N C +GDRVR+  +RP+S+ K WA+AE+L
Sbjct:    3 VKERVGTVVSDKMEKTVVVAVETRFPHPIYQKTVSRTTRYKAHDEDNSCRVGDRVRITETRPMSRQKRWAIAEVL 77          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBHB (30S ribosomal protein S17 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = -1
Query:  330 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 554
            G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C +GD V +   RPLSK K W + ++L+KA+I
Sbjct:   10 GRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGLGDTVEIAECRPLSKTKSWTLVKVLEKAKI 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBF1 (30S ribosomal protein S17 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 38/80 (47.50%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  333 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 572
            +++++ G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+C +GD V +   RPLSK K W +  I++KA+
Sbjct:    4 KIRTMQGRVISDKMDKSIVVAIERMVKHPIYGKYIKRTTKLHAHDENNECGLGDTVEIRECRPLSKTKSWTLVNIVEKAK 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THEPX (30S ribosomal protein S17 OS=Thermoanaerobacter sp. (strain X514) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = -1
Query:  336 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 557
            +G VVSNKMQK++VVAV+    H +Y + +KRT KF  HDENN CN+GD V++  +RPLSK K W + EI+K+A
Sbjct:   10 IGTVVSNKMQKTIVVAVEDRVRHPLYGKTIKRTKKFKVHDENNVCNVGDIVKIMETRPLSKEKRWRLVEIVKRA 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THEP3 (30S ribosomal protein S17 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = -1
Query:  336 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 557
            +G VVSNKMQK++VVAV+    H +Y + +KRT KF  HDENN CN+GD V++  +RPLSK K W + EI+K+A
Sbjct:   10 IGTVVSNKMQKTIVVAVEDRVRHPLYGKTIKRTKKFKVHDENNVCNVGDIVKIMETRPLSKEKRWRLVEIVKRA 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNR3 (30S ribosomal protein S17 OS=Synechococcus sp. (strain RCC307) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = -1
Query:  345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569
            +K  VG VVS+KM+K+VVVAV+  F H +Y + V RT+++  HDE+N+C +GDRVR+  +RPLS+ K WAVAEI+
Sbjct:    3 VKERVGTVVSDKMEKTVVVAVENRFPHPIYKKTVSRTTRYKVHDEDNRCQVGDRVRITETRPLSRSKRWAVAEIM 77          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_VIBCM1.948e-1849.3830S ribosomal protein S17 OS=Vibrio cholerae serot... [more]
RS17_VIBCH1.948e-1849.3830S ribosomal protein S17 OS=Vibrio cholerae GN=rp... [more]
RS17_VIBC31.948e-1849.3830S ribosomal protein S17 OS=Vibrio cholerae serot... [more]
RS17_THEMA1.948e-1853.9530S ribosomal protein S17 OS=Thermotoga maritima G... [more]
RS17_SYNS91.948e-1853.3330S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_VIBHB2.544e-1853.3330S ribosomal protein S17 OS=Vibrio harveyi (strai... [more]
RS17_VIBF12.544e-1847.5030S ribosomal protein S17 OS=Vibrio fischeri (stra... [more]
RS17_THEPX2.544e-1855.4130S ribosomal protein S17 OS=Thermoanaerobacter sp... [more]
RS17_THEP32.544e-1855.4130S ribosomal protein S17 OS=Thermoanaerobacter ps... [more]
RS17_SYNR32.544e-1854.6730S ribosomal protein S17 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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