CN186110
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNSC (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9605) GN=rpsQ PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18 Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = -1 Query: 345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569 +K +G VVS+KM+K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRVR+ +RP+S+ K WA+AE+L Sbjct: 3 VKERIGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNTCRVGDRVRITETRPMSRQKRWAIAEVL 77
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_GEOSF (30S ribosomal protein S17 OS=Geobacter sp. (strain FRC-32) GN=rpsQ PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18 Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = -1 Query: 339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566 K+ +G+VVS+KM K+VVV VDRL H VYN+Y+KR++K+ AHD +N C GDRV + +RP+SK K W V +I+++ Sbjct: 8 KTQIGVVVSDKMDKTVVVKVDRLIKHSVYNKYIKRSAKYKAHDVDNSCKTGDRVLIVETRPMSKDKRWKVRQIIER 83
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_KLEP7 (30S ribosomal protein S17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsQ PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.340e-18 Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = -1 Query: 336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572 +++++ G VVS+KM+KS+VVA++R+ H VY +++KRT+K HDENN+C IGD+V + RPLSK K W + +++KA Sbjct: 4 KIRTLQGRVVSDKMEKSIVVAIERMVKHPVYGKFIKRTTKLHVHDENNECGIGDKVEIRECRPLSKTKSWTLVRVVEKA 82
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROMT (30S ribosomal protein S17 OS=Prochlorococcus marinus (strain NATL2A) GN=rpsQ PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = -1 Query: 339 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 569 +K +VG VVS+KMQK+VVVAV+ F H +Y + + RT+++ AHD N C +GDRVR+ S P+S HK W V ++L K Sbjct: 3 LKEMVGTVVSDKMQKTVVVAVENRFPHPIYQKIISRTTRYKAHDAENHCKVGDRVRIKESPPISAHKRWTVTDVLVK 79
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROM1 (30S ribosomal protein S17 OS=Prochlorococcus marinus (strain NATL1A) GN=rpsQ PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = -1 Query: 339 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 569 +K +VG VVS+KMQK+VVVAV+ F H +Y + + RT+++ AHD N C +GDRVR+ S P+S HK W V ++L K Sbjct: 3 LKEMVGTVVSDKMQKTVVVAVENRFPHPIYQKIISRTTRYKAHDAENHCKVGDRVRIKESPPISAHKRWTVTDVLVK 79
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEFN (30S ribosomal protein S17 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsQ PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18 Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = -1 Query: 336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566 +++ G V+SNKM KS+ VA++R H +Y +Y+KRT+K AHDE NQCN GD V + RPLSK K W +AE++ KA Sbjct: 6 RTLQGKVISNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDFVAISQCRPLSKTKSWTLAEVVTKA 82
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PELPD (30S ribosomal protein S17 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsQ PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = -1 Query: 348 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEI 554 G+VVS+KM K+VVV VDRL H VYN+Y+KR++K+ HDENN C IGDRV++ RPLSK K W + +I Sbjct: 12 GVVVSDKMDKTVVVKVDRLIKHPVYNKYIKRSAKYKVHDENNVCKIGDRVQIIECRPLSKDKRWNLKQI 80
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PELCD (30S ribosomal protein S17 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsQ PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -1 Query: 339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566 K+ VG+V+S+KM K+VVV VD++ H +Y +Y+KR F AHDE N+CN+GD+V + +RPLS+ K W V EIL+K Sbjct: 9 KTRVGVVISDKMDKTVVVKVDQMVKHPIYKKYIKRRVTFKAHDEENRCNVGDKVSVVETRPLSRDKRWRVREILEK 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ANADF (30S ribosomal protein S17 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsQ PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18 Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = -1 Query: 330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566 KS +G+VVSNKM K+VVV V+R Y + VKR K+ AHDENN C IGD+VR+ +RP+SK K W +AE L+KA + Sbjct: 7 KSRIGVVVSNKMAKTVVVKVERRVADPKYGKIVKRAEKYKAHDENNACQIGDKVRIVETRPMSKDKRWRIAETLEKAEV 85
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THELT (30S ribosomal protein S17 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsQ PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18 Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = -1 Query: 339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566 K + G+VVSNKM K+VVV V R H VY +Y++R+ K+ AHDE N+C GD V ++ +RPLSK K W V E+LK+ Sbjct: 4 KRLTGVVVSNKMDKTVVVEVTRKLEHPVYKKYIQRSKKYYAHDEKNECKAGDTVLIEETRPLSKMKRWRVVEVLKR 79 The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bpback to top |