CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNSC (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9605) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = -1
Query:  345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569
            +K  +G VVS+KM+K+VVVAV+  F H +Y + V RT+++ AHDE+N C +GDRVR+  +RP+S+ K WA+AE+L
Sbjct:    3 VKERIGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNTCRVGDRVRITETRPMSRQKRWAIAEVL 77          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_GEOSF (30S ribosomal protein S17 OS=Geobacter sp. (strain FRC-32) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K+ +G+VVS+KM K+VVV VDRL  H VYN+Y+KR++K+ AHD +N C  GDRV +  +RP+SK K W V +I+++
Sbjct:    8 KTQIGVVVSDKMDKTVVVKVDRLIKHSVYNKYIKRSAKYKAHDVDNSCKTGDRVLIVETRPMSKDKRWKVRQIIER 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_KLEP7 (30S ribosomal protein S17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.340e-18
Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R+  H VY +++KRT+K   HDENN+C IGD+V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERMVKHPVYGKFIKRTTKLHVHDENNECGIGDKVEIRECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROMT (30S ribosomal protein S17 OS=Prochlorococcus marinus (strain NATL2A) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  339 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 569
            +K +VG VVS+KMQK+VVVAV+  F H +Y + + RT+++ AHD  N C +GDRVR+  S P+S HK W V ++L K
Sbjct:    3 LKEMVGTVVSDKMQKTVVVAVENRFPHPIYQKIISRTTRYKAHDAENHCKVGDRVRIKESPPISAHKRWTVTDVLVK 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROM1 (30S ribosomal protein S17 OS=Prochlorococcus marinus (strain NATL1A) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  339 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 569
            +K +VG VVS+KMQK+VVVAV+  F H +Y + + RT+++ AHD  N C +GDRVR+  S P+S HK W V ++L K
Sbjct:    3 LKEMVGTVVSDKMQKTVVVAVENRFPHPIYQKIISRTTRYKAHDAENHCKVGDRVRIKESPPISAHKRWTVTDVLVK 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEFN (30S ribosomal protein S17 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566
            +++ G V+SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W +AE++ KA
Sbjct:    6 RTLQGKVISNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDFVAISQCRPLSKTKSWTLAEVVTKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PELPD (30S ribosomal protein S17 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = -1
Query:  348 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEI 554
            G+VVS+KM K+VVV VDRL  H VYN+Y+KR++K+  HDENN C IGDRV++   RPLSK K W + +I
Sbjct:   12 GVVVSDKMDKTVVVKVDRLIKHPVYNKYIKRSAKYKVHDENNVCKIGDRVQIIECRPLSKDKRWNLKQI 80          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PELCD (30S ribosomal protein S17 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K+ VG+V+S+KM K+VVV VD++  H +Y +Y+KR   F AHDE N+CN+GD+V +  +RPLS+ K W V EIL+K
Sbjct:    9 KTRVGVVISDKMDKTVVVKVDQMVKHPIYKKYIKRRVTFKAHDEENRCNVGDKVSVVETRPLSRDKRWRVREILEK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ANADF (30S ribosomal protein S17 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            KS +G+VVSNKM K+VVV V+R      Y + VKR  K+ AHDENN C IGD+VR+  +RP+SK K W +AE L+KA +
Sbjct:    7 KSRIGVVVSNKMAKTVVVKVERRVADPKYGKIVKRAEKYKAHDENNACQIGDKVRIVETRPMSKDKRWRIAETLEKAEV 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THELT (30S ribosomal protein S17 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K + G+VVSNKM K+VVV V R   H VY +Y++R+ K+ AHDE N+C  GD V ++ +RPLSK K W V E+LK+
Sbjct:    4 KRLTGVVVSNKMDKTVVVEVTRKLEHPVYKKYIQRSKKYYAHDEKNECKAGDTVLIEETRPLSKMKRWRVVEVLKR 79          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_SYNSC3.323e-1852.0030S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_GEOSF3.323e-1852.6330S ribosomal protein S17 OS=Geobacter sp. (strain... [more]
RS17_KLEP74.340e-1848.1030S ribosomal protein S17 OS=Klebsiella pneumoniae... [more]
RS17_PROMT5.668e-1850.6530S ribosomal protein S17 OS=Prochlorococcus marin... [more]
RS17_PROM15.668e-1850.6530S ribosomal protein S17 OS=Prochlorococcus marin... [more]
RS17_SHEFN7.402e-1851.9530S ribosomal protein S17 OS=Shewanella frigidimar... [more]
RS17_PELPD7.402e-1859.4230S ribosomal protein S17 OS=Pelobacter propionicu... [more]
RS17_PELCD7.402e-1852.6330S ribosomal protein S17 OS=Pelobacter carbinolic... [more]
RS17_ANADF7.402e-1854.4330S ribosomal protein S17 OS=Anaeromyxobacter sp. ... [more]
RS17_THELT9.668e-1852.6330S ribosomal protein S17 OS=Thermotoga lettingae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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