CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MARAV (30S ribosomal protein S17 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566
            +++ G VVSNKM KS+VV V+R   H +Y +Y+KR++K  AHDE+NQCNIGD V +  +RP+SK K WA+ E+ ++A
Sbjct:    9 RTLSGKVVSNKMDKSIVVLVERQVKHPLYGKYMKRSTKIHAHDESNQCNIGDTVTIQETRPVSKTKSWALVEVTERA 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_GEOLS (30S ribosomal protein S17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = -1
Query:  336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566
            ++  G+VVS+KM+K+VVV VDRL  H +YN+Y+KR+ K+  HDE N C  GD+V++   RPLSK K WA+ +IL+ A
Sbjct:    8 RTQTGVVVSDKMEKTVVVRVDRLVKHPLYNKYIKRSVKYKVHDEKNSCKAGDKVQIVECRPLSKDKRWALRQILESA 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ROSCS (30S ribosomal protein S17 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = -1
Query:  339 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 557
            VG VVSNKMQK+VVVAVD L  H +Y + V+RTSKF AHDE  QC IGD VR+  +RPLSK K W V EI+K+
Sbjct:   11 VGRVVSNKMQKTVVVAVDYLKPHPLYRKIVRRTSKFHAHDE-QQCQIGDVVRIGETRPLSKTKRWEVVEIIKR 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MOOTA (30S ribosomal protein S17 OS=Moorella thermoacetica (strain ATCC 39073) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K+ VG VVS+KM K+VVVAV+    H + N+ ++ T KF AHDE N+C IGD+VR+  +RPLSK K W V EI+++AR
Sbjct:    7 KTRVGSVVSDKMDKTVVVAVEDRVRHPLLNKIIRHTRKFKAHDEKNECRIGDKVRIMETRPLSKEKRWRVVEIMERAR 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEDO (30S ribosomal protein S17 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K WA+ E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPLYGKYIKRTTKIHAHDETNQCNEGDVVTISQCRPLSKTKSWALVEVVTKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ROSS1 (30S ribosomal protein S17 OS=Roseiflexus sp. (strain RS-1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = -1
Query:  339 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 557
            VG VVSNKMQK+VVVAVD L  H +Y + ++RTSKF AHDE  QC IGD VR+  +RPLSK K W V EI+K+
Sbjct:   11 VGRVVSNKMQKTVVVAVDYLKPHPLYRKIIRRTSKFHAHDE-QQCRIGDIVRIGETRPLSKTKRWEVVEIIKR 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROMH (30S ribosomal protein S17 OS=Proteus mirabilis (strain HI4320) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KSVVVA+DR+  H +Y ++++RT+K   HDENN+C +GD V +  +RP+SK K WA+  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSVVVAIDRMVKHPLYGKFIRRTTKLHVHDENNECGMGDVVEIRQTRPISKTKSWALVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_GEOMG (30S ribosomal protein S17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K+ VG+VVS+KM K+VVV V  L  H VYN+Y+KR+ K+ AHDE N C  GDRV++  +RPLSK K W V +I+ +
Sbjct:    8 KTQVGIVVSDKMDKTVVVQVSHLVKHPVYNKYIKRSVKYKAHDEENSCKSGDRVQIVETRPLSKDKRWRVRQIIDR 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ENT38 (30S ribosomal protein S17 OS=Enterobacter sp. (strain 638) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R+  H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERIVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIHECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_HAHCH (30S ribosomal protein S17 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  336 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 569
            +++  G VVS+KM KS+VV V+R   H +Y +YVKR+SK  AHDENN+C IGD V++  SRPLSK K W +  I+++A
Sbjct:    8 VRTETGKVVSDKMDKSIVVLVERRVKHPLYGKYVKRSSKLHAHDENNECRIGDTVQVQESRPLSKTKSWKLVNIVERA 85          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_MARAV9.668e-1851.9530S ribosomal protein S17 OS=Marinobacter aquaeole... [more]
RS17_GEOLS9.668e-1851.9530S ribosomal protein S17 OS=Geobacter lovleyi (st... [more]
RS17_ROSCS1.263e-1764.3830S ribosomal protein S17 OS=Roseiflexus castenhol... [more]
RS17_MOOTA1.263e-1753.8530S ribosomal protein S17 OS=Moorella thermoacetic... [more]
RS17_SHEDO1.649e-1750.6330S ribosomal protein S17 OS=Shewanella denitrific... [more]
RS17_ROSS11.649e-1763.0130S ribosomal protein S17 OS=Roseiflexus sp. (stra... [more]
RS17_PROMH1.649e-1746.8430S ribosomal protein S17 OS=Proteus mirabilis (st... [more]
RS17_GEOMG1.649e-1753.9530S ribosomal protein S17 OS=Geobacter metalliredu... [more]
RS17_ENT381.649e-1746.8430S ribosomal protein S17 OS=Enterobacter sp. (str... [more]
RS17_HAHCH2.154e-1752.5630S ribosomal protein S17 OS=Hahella chejuensis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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