CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHIL3 (30S ribosomal protein S17 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G+VV +K +K+VVV V+R F H +  + V+R+ K+ AHDENNQ  IGD V ++   P+SK K W V
Sbjct:    8 GVVVGDKNEKTVVVRVERRFAHPLLQKTVRRSKKYKAHDENNQYKIGDTVSIEECAPISKDKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHIE6 (30S ribosomal protein S17 OS=Rhizobium etli (strain CIAT 652) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G+VV +K +K+VVV V+R F H +  + V+R+ K+ AHDENNQ  IGD V ++   P+SK K W V
Sbjct:    8 GVVVGDKNEKTVVVRVERRFAHPLLQKTVRRSKKYKAHDENNQYKIGDTVSIEECAPISKDKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CORGL (30S ribosomal protein S17 OS=Corynebacterium glutamicum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575
            S  K   G VVS+KMQK++VV V+    H +Y + ++   K  AHDE     IGD VR++ +RPLSK K++ + EI++KA+
Sbjct:   12 STRKVRTGYVVSDKMQKTIVVEVEDRKQHALYGKILRSAKKVKAHDEEQIAGIGDLVRIEETRPLSKDKNYRLIEIVEKAK 92          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CORGB (30S ribosomal protein S17 OS=Corynebacterium glutamicum (strain R) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575
            S  K   G VVS+KMQK++VV V+    H +Y + ++   K  AHDE     IGD VR++ +RPLSK K++ + EI++KA+
Sbjct:   12 STRKVRTGYVVSDKMQKTIVVEVEDRKQHALYGKILRSAKKVKAHDEEQIAGIGDLVRIEETRPLSKDKNYRLIEIVEKAK 92          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BIFLO (30S ribosomal protein S17 OS=Bifidobacterium longum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  333 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 554
            G VVS+KM K++ V +++   H +Y + V+ TSK  AHDE+N  +IGD V +  +RPLSK K W +  I+++A+
Sbjct:   13 GYVVSDKMDKTITVELEQRSTHPLYGKVVRSTSKVKAHDEHNDAHIGDLVSIMETRPLSKTKRWRLESIIERAK 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BIFLI (30S ribosomal protein S17 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  333 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 554
            G VVS+KM K++ V +++   H +Y + V+ TSK  AHDE+N  +IGD V +  +RPLSK K W +  I+++A+
Sbjct:   13 GYVVSDKMDKTITVELEQRSTHPLYGKVVRSTSKVKAHDEHNDAHIGDLVSIMETRPLSKTKRWRLESIIERAK 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BIFLD (30S ribosomal protein S17 OS=Bifidobacterium longum (strain DJO10A) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  333 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 554
            G VVS+KM K++ V +++   H +Y + V+ TSK  AHDE+N  +IGD V +  +RPLSK K W +  I+++A+
Sbjct:   13 GYVVSDKMDKTITVELEQRSTHPLYGKVVRSTSKVKAHDEHNDAHIGDLVSIMETRPLSKTKRWRLESIIERAK 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_STRU0 (30S ribosomal protein S17 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q +++VG VVS+KM K++ V V+   +H VY + +  + K+ AHDE N    GD VR+  +RPLS  KH+ + E+L++A I
Sbjct:    4 NQRRTLVGRVVSDKMDKTITVIVETKRNHPVYGKRINYSKKYKAHDEKNIAKEGDIVRIMETRPLSATKHFRLVEVLEEAVI 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_STRTD (30S ribosomal protein S17 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K++VG VVS+KM K++ V V+   +H VY + +  + K+ AHDENN    GD VR+  +RPLS  K + + E++++A I
Sbjct:    4 NQRKTLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNVAKEGDIVRIMETRPLSATKRFRLVEVVEEAVI 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHISN (30S ribosomal protein S17 OS=Rhizobium sp. (strain NGR234) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G VVS+K  K+VVV V+R F H +  + V+R+ K+ AHDENNQ  +GD V ++   P+SK K W V
Sbjct:    8 GTVVSDKNDKTVVVKVERRFAHPILQKTVRRSKKYKAHDENNQYKVGDVVSIEECAPISKDKRWTV 73          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_RHIL31.352e-1148.4830S ribosomal protein S17 OS=Rhizobium leguminosar... [more]
RS17_RHIE61.352e-1148.4830S ribosomal protein S17 OS=Rhizobium etli (strai... [more]
RS17_CORGL1.352e-1143.2130S ribosomal protein S17 OS=Corynebacterium gluta... [more]
RS17_CORGB1.352e-1143.2130S ribosomal protein S17 OS=Corynebacterium gluta... [more]
RS17_BIFLO1.352e-1143.2430S ribosomal protein S17 OS=Bifidobacterium longu... [more]
RS17_BIFLI1.352e-1143.2430S ribosomal protein S17 OS=Bifidobacterium longu... [more]
RS17_BIFLD1.352e-1143.2430S ribosomal protein S17 OS=Bifidobacterium longu... [more]
RS17_STRU01.766e-1141.4630S ribosomal protein S17 OS=Streptococcus uberis ... [more]
RS17_STRTD1.766e-1141.4630S ribosomal protein S17 OS=Streptococcus thermop... [more]
RS17_RHISN1.766e-1148.4830S ribosomal protein S17 OS=Rhizobium sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
back to top