CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CLOCE (30S ribosomal protein S17 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K+ VG VVSNKM K++VVA++    H +Y + VKRT K  AHDE NQC IGD+V++  +RPLSK K W + +I++KA+
Sbjct:    8 KTRVGKVVSNKMDKTIVVAIETSVKHPLYGKIVKRTYKLKAHDEENQCQIGDKVKVMETRPLSKEKRWRLVQIVEKAQ 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ANAVT (30S ribosomal protein S17 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569
            +K  VGLVVS+KMQK+VVVA++    H  Y + V +T ++ AHDE+N+C +GDRVR+  +RPLSK K W VAEIL
Sbjct:    3 IKERVGLVVSDKMQKTVVVAIENRAPHPKYGKIVVKTRRYKAHDEDNKCKVGDRVRIQETRPLSKTKRWQVAEIL 77          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ANASP (30S ribosomal protein S17 OS=Anabaena sp. (strain PCC 7120) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569
            +K  VGLVVS+KMQK+VVVA++    H  Y + V +T ++ AHDE+N+C +GDRVR+  +RPLSK K W VAEIL
Sbjct:    3 IKERVGLVVSDKMQKTVVVAIENRAPHPKYGKIVVKTRRYKAHDEDNKCKVGDRVRIQETRPLSKTKRWQVAEIL 77          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHESW (30S ribosomal protein S17 OS=Shewanella sp. (strain W3-18-1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W + E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDLVAIRECRPLSKTKSWTLVEVVSKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEPC (30S ribosomal protein S17 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W + E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDLVAIRECRPLSKTKSWTLVEVVSKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEB9 (30S ribosomal protein S17 OS=Shewanella baltica (strain OS195) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W + E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDLVAIRECRPLSKTKSWTLVEVVSKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEB8 (30S ribosomal protein S17 OS=Shewanella baltica (strain OS185) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W + E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDLVAIRECRPLSKTKSWTLVEVVSKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEB5 (30S ribosomal protein S17 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W + E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDLVAIRECRPLSKTKSWTLVEVVSKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SHEB2 (30S ribosomal protein S17 OS=Shewanella baltica (strain OS223) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G V SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V +   RPLSK K W + E++ KA
Sbjct:    4 KIRTLQGRVTSNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDLVAIRECRPLSKTKSWTLVEVVSKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROMA (30S ribosomal protein S17 OS=Prochlorococcus marinus GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = -1
Query:  333 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 569
            +K  +G VVS+KM K+VVVAV   F H +Y + V RT+++ AHDE N C +GDRVR+  +RPLS  K W+VAE+L+  +
Sbjct:    3 LKERLGTVVSDKMDKTVVVAVVNRFPHSIYQKTVSRTTRYKAHDEENNCKVGDRVRITETRPLSATKRWSVAEVLRTTK 81          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_CLOCE2.154e-1752.5630S ribosomal protein S17 OS=Clostridium celluloly... [more]
RS17_ANAVT2.154e-1756.0030S ribosomal protein S17 OS=Anabaena variabilis (... [more]
RS17_ANASP2.154e-1756.0030S ribosomal protein S17 OS=Anabaena sp. (strain ... [more]
RS17_SHESW2.813e-1749.3730S ribosomal protein S17 OS=Shewanella sp. (strai... [more]
RS17_SHEPC2.813e-1749.3730S ribosomal protein S17 OS=Shewanella putrefacie... [more]
RS17_SHEB92.813e-1749.3730S ribosomal protein S17 OS=Shewanella baltica (s... [more]
RS17_SHEB82.813e-1749.3730S ribosomal protein S17 OS=Shewanella baltica (s... [more]
RS17_SHEB52.813e-1749.3730S ribosomal protein S17 OS=Shewanella baltica (s... [more]
RS17_SHEB22.813e-1749.3730S ribosomal protein S17 OS=Shewanella baltica (s... [more]
RS17_PROMA2.813e-1750.6330S ribosomal protein S17 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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