CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_HELMI (30S ribosomal protein S17 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            ++ K+ +G V SNKM+K+VVVAV+    H +Y R VK+T KF AHDE N C IGD V +  +RPLSK K W V  I++KA I
Sbjct:    5 AERKTRIGKVTSNKMEKTVVVAVESRIQHPLYGRTVKKTKKFKAHDEENACQIGDVVEIMETRPLSKEKRWRVVRIVEKAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CYTH3 (30S ribosomal protein S17 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K   G VVSNKM KS+ VAV+R   H  Y +++ +T+K MAHDEN +C IGD VR+  +RPLSK K W + E+++KA+
Sbjct:   10 KERTGKVVSNKMNKSITVAVERKVKHAKYGKFIHKTTKLMAHDENQECGIGDTVRVMETRPLSKLKRWRLVEVIEKAK 87          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CLOD6 (30S ribosomal protein S17 OS=Clostridium difficile (strain 630) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  333 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 557
            +G VVS+KM K++VVAV+    H +YN+ VKRT KF AHDE N CNIGDRV++  +RPLSK K + + E+++K +
Sbjct:   10 IGRVVSDKMDKTIVVAVEEFVRHPLYNKRVKRTKKFKAHDEKNICNIGDRVKIMETRPLSKDKRFRLVEVVEKVK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ALISL (30S ribosomal protein S17 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  333 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 572
            +++++ G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+C  GD V +   RPLSK K W +  I++KA+
Sbjct:    4 KIRTMQGRVISDKMDKSIVVAIERMVKHPIYGKYIKRTTKLHAHDENNECGQGDLVVIRECRPLSKTKSWTLVNIVEKAK 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_YERPY (30S ribosomal protein S17 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            Q++++ G VVS+KM+KS+VVA++R+  H +Y ++++RT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 QIRTLQGRVVSDKMEKSMVVAIERVVKHPIYGKFIRRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_YERPS (30S ribosomal protein S17 OS=Yersinia pseudotuberculosis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            Q++++ G VVS+KM+KS+VVA++R+  H +Y ++++RT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 QIRTLQGRVVSDKMEKSMVVAIERVVKHPIYGKFIRRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_YERPP (30S ribosomal protein S17 OS=Yersinia pestis (strain Pestoides F) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            Q++++ G VVS+KM+KS+VVA++R+  H +Y ++++RT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 QIRTLQGRVVSDKMEKSMVVAIERVVKHPIYGKFIRRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_YERPN (30S ribosomal protein S17 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            Q++++ G VVS+KM+KS+VVA++R+  H +Y ++++RT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 QIRTLQGRVVSDKMEKSMVVAIERVVKHPIYGKFIRRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_YERPE (30S ribosomal protein S17 OS=Yersinia pestis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            Q++++ G VVS+KM+KS+VVA++R+  H +Y ++++RT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 QIRTLQGRVVSDKMEKSMVVAIERVVKHPIYGKFIRRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_YERPB (30S ribosomal protein S17 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            Q++++ G VVS+KM+KS+VVA++R+  H +Y ++++RT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 QIRTLQGRVVSDKMEKSMVVAIERVVKHPIYGKFIRRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_HELMI2.813e-1752.4430S ribosomal protein S17 OS=Heliobacterium modest... [more]
RS17_CYTH32.813e-1751.2830S ribosomal protein S17 OS=Cytophaga hutchinsoni... [more]
RS17_CLOD62.813e-1753.3330S ribosomal protein S17 OS=Clostridium difficile... [more]
RS17_ALISL2.813e-1747.5030S ribosomal protein S17 OS=Aliivibrio salmonicid... [more]
RS17_YERPY3.674e-1746.8430S ribosomal protein S17 OS=Yersinia pseudotuberc... [more]
RS17_YERPS3.674e-1746.8430S ribosomal protein S17 OS=Yersinia pseudotuberc... [more]
RS17_YERPP3.674e-1746.8430S ribosomal protein S17 OS=Yersinia pestis (stra... [more]
RS17_YERPN3.674e-1746.8430S ribosomal protein S17 OS=Yersinia pestis bv. A... [more]
RS17_YERPE3.674e-1746.8430S ribosomal protein S17 OS=Yersinia pestis GN=rp... [more]
RS17_YERPB3.674e-1746.8430S ribosomal protein S17 OS=Yersinia pseudotuberc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
back to top