DC900169

Overview
NameDC900169
Unique NameDC900169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1213
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12448 contig Csv1_Contig12448:2121..3333. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.012e-15
Identity = 67/252 (26.59%), Postives = 100/252 (39.68%), Query Frame = 3 
Query:    6 FSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTD---------------LSSAGKGKSSNEKD------------GDSMQVDXXXXXXXXXXXSFE----ILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEY 668
            F+Q+WYW+PL + +SLAF+PT +IGLN DLK+P+ E+ S AKPSL+ YP P     +    K+  AVLS +                        +               + +  K K  +EK+            G S + D             E    IL NPARV+  Q K +  ++   Y P+K    G +++      + E   L +                          ++EP+PP PFEY
Sbjct:  782 FTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYAYPAPLEEKKSEEREKVATAVLSIAARQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEAKADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQ-HTGKAEDQELVEPVAAFGPMNDE---------------EKEPEPPEPFEY 1017
The following BLAST results are available for this feature:
BLAST of DC900169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSMD1_DROME2.012e-1526.5926S proteasome non-ATPase regulatory subunit 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900169 VSS Citrus sinensis cDNA clone VS27V92 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900169 ID=DC900169; Name=DC900169; organism=Citrus sinensis; type=EST; length=1213bp
CTGTTTTTAGCCAGTTTTGGTATTGGTATCCCCTTATATACTTCATTAGC
TTGGCGTTTTCACCCACGGCTTTAATTGGACTCAACTATGACTTGAAAGT
TCCTCGGTTTGAATTCTTATCACATGCGAAACCTTCTCTGTTCGAATATC
CGAAACCTACCACTGTGCCCACCACCACATCAGCTGTAAAACTTCCCGCT
GCTGTTCTGTCAACTTCAGCTAAGGCCAAAGCTCGGGCTAAGAAAGAAGC
GGAGCAGAAAGAGAAAGAGAAAGCGACTGCTGAAAAGACAGATTTGTCCT
CTGCCGGAAAAGGAAAATCATCTAATGAGAAAGATGGAGACTCTATGCAG
GTTGATGCACCTCCAGAGAAGAAAGCAGAGCCTGAGCCTTCTTTCGAAAT
TTTGATTAACCCTGCCAGGGTGGTTCCAGCACAGGAGAAGTTCATTAAAT
TTCTTGAGGACAGCAGATATGTGCCTGTGAAGTCAGCACCATCAGGGTTT
GTTCTCCTGAGGGACTTGCGTCCCAATGAACCAGAGGTACTATCCCTCAC
AGATGCTCCATCGTCTACACAGTCACCTGCTGGTGGTGGGTCAACAACGG
GACAGCAGGGTTCTGCTTCGGCCATGGCTGTTGATGAAGAACCTCAGCCA
CCAGCTCCTTTCGAGTACACCTCATGATTCAGCTAGTGTGTGATTTTGAT
CCTCTGTTTTGGGAGTAGAGGTGCTACGAGCGGAAGAAACAAACAAATTG
GTCTGATTAACCGCTGCTACAATCCTGCTTGGTGAGATGAGCAACAAAGG
TTGAATTAGCAGGCNCTTTGCAGGTTCTCTGTTATCGTGAAACTGTAAAC
TGTTTTAGTTTAATTTGTATGTTTATTTTTAAAGGTGAACAGGGAAAGAT
GGAACCTGCAAATACNCTGGATCTAGGAAAGTTCTTAATCATCTTCCCTG
TAATTTAAGACATTGTTTTCNCCGAAAAAAAATCTAGACNCTGAACAGAG
CAAAAGATGTCATTCTAGATGAATTTGTTGTGTTTCTTTTGTAGTTACGT
TTAATTCGGAAGACTGGAAAGGGGAACCTCGCTCAAGCCTCCCCAGGGTT
CATGAGTTTGCAATTAGTTAACAGTATCTTGTTTAAGCATCATATTTGGT
TTTTTGTGTAATTTGCGTATTACTCTCAGTGAGCATGACATAATAGATGG
CTGCAATTTCAAT
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