DC900167

Overview
NameDC900167
Unique NameDC900167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 1
Query:   88 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            E ++IP+GV+V +    ++V+GP+G+L R+F    +        E G   +  D  F  RK  A  RT  +H+ N+I GVT+G+ YK++ VY+HFPI+  +  +   IE  NFLGEK  RK  +L GVTV    KV+  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.469e-26
Identity = 60/190 (31.58%), Postives = 108/190 (56.84%), Query Frame = 1
Query:   67 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 636
            M+ ++  E ++IP  V V +   +I+++GP+G++ +DF      F           K+ ++  F +R+  A   + +SH+ N+ITGVTKGYRY ++ +Y HFP +  +  N   ++I N +GEK  R+  +L+GV V       +++V++G ++E V+++AA I     +   D R F DGI++ +K  I
Sbjct:    1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFS-----FAKGIQISLDGNKIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.755e-25
Identity = 66/178 (37.08%), Postives = 105/178 (58.99%), Query Frame = 1
Query:   94 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            +DIPDGV V+I+ + + V+GP+G+LSR+  + +++       +    K+ I +    ++  A + T  +H+ N+I GVT G+ Y+MR VY+HFPI   + +   AI   NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY+ EK
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.699e-25
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   79 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            L  E ++IP+ V V++N   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.699e-25
Identity = 69/184 (37.50%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   79 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            L  E ++IP+ V V+IN   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24
Identity = 61/180 (33.89%), Postives = 105/180 (58.33%), Query Frame = 1
Query:   94 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            +++P GV V ++   +  +G +G++SR+F+   +         T   K+ ++     ++T A + T  SH+ N++TGV++GY Y M+ VYAHFPI   +   +K + I NFLGE+K R  +++    V ++ DKV    VL G + E + ++AA I Q C ++ +D R F DGIY++ K+
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 1
Query:   88 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            E ++IP+GV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E   ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   79 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            L  E ++IP+ V V+IN   + V+    +L R+  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 67/181 (37.02%), Postives = 103/181 (56.91%), Query Frame = 1
Query:   88 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            E + IP+ V+V+IN   + V+    +L R F+H  +      DE      + I   +  RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+  N   IE  NFLGEK  R+  +++GVTV  S    +++++ G D E V ++AA I Q   +K +D R F DGIY+ EK+
Sbjct:    9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 59/190 (31.05%), Postives = 107/190 (56.32%), Query Frame = 1
Query:   67 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 636
            +K     E + IPD VKV +   V++V+GP+G++ +DF +      +  +E     K+ ++  F  R+  A + + ++H+ N+ITG   GYRY ++ +  HFPI+  +  +   +++ N +GEK +R+  +L GV V       +++V++G+DI  V+++AA I     +   D R F DGIY+ +K  I
Sbjct:    4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183          
The following BLAST results are available for this feature:
BLAST of DC900167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_PYRFU7.250e-2639.5650S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_SULSO9.469e-2631.5850S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_METTP2.755e-2537.0850S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METM74.699e-2536.9650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM54.699e-2537.5050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_UNCMA1.367e-2433.8950S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_PYRHO1.367e-2437.9150S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_METMP3.046e-2436.9650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METJA3.978e-2437.0250S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_SULAC5.196e-2431.0550S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionDC900167 VSS Citrus sinensis cDNA clone VS27V88 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900167 ID=DC900167; Name=DC900167; organism=Citrus sinensis; type=EST; length=830bp
CTCGTGCCGAATTCGGCACGAGGCGTAGGAGGAGAAGAAGAAGGAAGATA
TTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACTATGGACA
TCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAGTAGAG
GGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTT
CCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATG
CCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGC
CATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGAT
GAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATA
ACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAA
GTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGA
TGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTG
CTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTT
CTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATG
ATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATGAATTTTTTTT
TAAATCTTTTTAATTTTGCCTCTTACTTTGAGTTGAGGACATGCTTTTGG
TTGTATTTGGGATTTGGGACTTGGGAGTTCTAGATTTCAATTTTATGTCT
TCAATTGCTATCATCACAATATATGTATGG
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