CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 53/98 (54.08%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  424 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LGI  PKGVLLYGPPGTGKTL+ARA A  T
Sbjct:  131 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQT 228          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L  ++R    +  R   + +    +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T
Sbjct:   32 LDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 63/198 (31.82%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L  ++R     L R   + +    +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y  IGGL++QI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKTL+ARA A  T
Sbjct:   31 LDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 228          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L  + R     L R   +      +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H + F+ LGI  PKGVLLYGPPGTGKTL+ARA A  T
Sbjct:   37 LDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQT 234          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 1
Query:  499 VNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V+ +K  KVPD TY+ IGGL +++K+++E+IELP++HPELFE LGI  PKGVLL GPPGTGKTLLA+AVA+
Sbjct:  165 VSEIKETKVPDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVAN 235          

HSP 2 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  487 VDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            V+P      + +VP+  ++ IGGL++  +E++E +E P+K  E+FE +G+  PKGVLL+GPPGTGKTLLA+AVA+ +
Sbjct:  434 VEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANES 510          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 43/63 (68.25%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  523 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            VPD TY+ IGGL ++++ ++E+IELP+KHPELF+ LGI  PKGVLLYGPPGTGKTL+A+AVA+
Sbjct:  176 VPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVAN 238          

HSP 2 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  487 VDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            ++P      + +VP+  ++ IGGL+   +E+ E +E P+K+PE+F +  I  P+G+LL+GPPGTGKTLLA+AVA+ +
Sbjct:  437 IEPSAMREVLVEVPNVKWEDIGGLEHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANES 513          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1
Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +E+V   +Y+ IGGL +Q+ +I+E+IELP+KHPELFE LGI  PKGV+LYGPPGTGKTL+ARAVA+ +
Sbjct:  181 LEEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANES 248          

HSP 2 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            +VP+  +D IGGL+   +EIKE +ELP+  P++F+ LGI   KG LLYGPPG GKTLLA+AVA
Sbjct:  460 EVPNVHWDDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVA 522          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  499 VNLMKV---EKVPDS----TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            +NL K+    K  DS    TYDMIGGL+ Q+K I+E+IELP+K PELF+S GI  P+G+LLYGPPGTGKT++ARAVA+
Sbjct:  332 INLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVAN 409          

HSP 2 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  523 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            VP+ ++  IGGL+    ++K+ +E P+KHP+ F  +GI  PKGVLLYGPPG  KT++A+A+A+ +
Sbjct:  621 VPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANES 685          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1
Query:  535 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            TYDMIGGL  Q+K I+E+IELP+K PELF+S GI  P+GVLLYGPPGTGKT++ARAVA+
Sbjct:  351 TYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVAN 409          

HSP 2 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 54/181 (29.83%), Postives = 92/181 (50.83%), Query Frame = 1
Query:  184 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGS---YVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E+++ V      L+ L+    +L  RV  L  E +LLQ   S   YVG  +KV+     L  +    + ++               ++ L++    ++ I PS +  +        VP+ ++  IGGL+    ++++ +E P+KHPE F  +GI  PKGVLLYGPPG  KT++A+A+A+ +
Sbjct:  518 EIEIGVPNAQDRLDILQ----KLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCAL----RRILKKQPNLPDVKVAGLVKITLKDFLQAMNDIRPSAMREIAI-----DVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANES 685          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 40/76 (52.63%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            DP+    + E + D  YD +GG+ +Q+ +IKE++ELP++HP+LF+++GI  P+G+LL+GPPGTGKTL+ARAVA+ T
Sbjct:  193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVANET 268          

HSP 2 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 30/66 (45.45%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V + P++T+  IGGL    +E++E+++ P++HPE +   G+   +GVL YGPPG GKTLLA+A+A+
Sbjct:  474 VVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 539          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
PS6AB_ARATH3.792e-2254.0826S protease regulatory subunit 6A homolog B OS=Ar... [more]
PS6AA_ARATH3.792e-2231.8226S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_SOLLC3.792e-2231.8226S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ1.441e-2131.8226S protease regulatory subunit 6A homolog OS=Oryz... [more]
Y1156_METJA4.192e-2166.20Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
Y1297_ARCFU1.349e-1968.25Cell division cycle protein 48 homolog AF_1297 OS=... [more]
VAT_THEAC1.761e-1964.71VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
SPAT5_MOUSE2.300e-1961.54Spermatogenesis-associated protein 5 OS=Mus muscul... [more]
SPAT5_HUMAN3.004e-1972.88Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
TERA1_CAEEL1.142e-1852.63Transitional endoplasmic reticulum ATPase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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