CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            K+P+ T+D +GGL+     + E I+LP++ PELF   G+ +  G+L YGPPGTGKTLLA+A+A
Sbjct:  987 KIPNVTWDDVGGLNNVKDAVTETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIA 1048          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  508 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            + + K  D  +D IGGL +  + + + I+LP K+PELF +L I Q  G+LLYGPPGTGKTLLA  +A  +
Sbjct:  829 VNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARES 898          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            K+P  ++  +GGL    KEI E I+LP++HPEL  SLG+ +  G+LL+GPPGTGKTLLA+AVA
Sbjct:  696 KIPSVSWHDVGGLQDVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAKAVA 756          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            K+P+ T+D +GGL      I E I+LP++ PELF   G+ +  G+L YGPPGTGKTLLA+A+A
Sbjct:  984 KIPNVTWDDVGGLGNVKDAITETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIA 1045          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            K+P+  ++ IGGL+    EI + I++P+K PELF S G+ +  G+L YGPPGTGKTLLA+AVA
Sbjct:  716 KIPNVFWEDIGGLEMVKGEILDTIDMPLKFPELFAS-GMKKRSGILFYGPPGTGKTLLAKAVA 777          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  472 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            I  S V P +N     ++P  T+D +GGL    K++++ +E PIKH   F  +GI+  +G+LL+GPPG  KT LA+A A+
Sbjct:  263 IAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAAN 342          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 33/82 (40.24%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  469 LILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLG--IAQPKGVLLYGPPGTGKTLLARAVA 708
            L+LPS++D              ++D IGG+D+ + ++ + +  P+K+PE+F++ G  ++ PKG+LLYGPPG GKT+LA+A+A
Sbjct:   78 LVLPSEIDV-------------SFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALA 146          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            DP  N   ++      ++ IGGL+  I ++KE++ LP+ +PE+F  L I  P+GVL +GPPGTGKTL+AR +A
Sbjct:  361 DPFANRENLD------FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  472 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            I PS    ++ LM ++ V    ++ IGGL+    ++K+ IE P+K P  F  +G+ QPKGVLLYGPPG  KT L RA+A
Sbjct:  444 IQPSSFRSVIGLMDIKPVD---WEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALA 519          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            ++P  ++  +GGL    KEI E I+LP++HPEL  SLG+ +  G+LL+GPPGTGKTLLA+AVA
Sbjct:  699 RIPSVSWHDVGGLQDVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAKAVA 759          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
PEX6_GLOLA1.352e-1150.79Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
PEX1_HUMAN1.352e-1148.57Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
PEX6_RAT1.765e-1157.14Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
PEX6_NEUCR1.765e-1152.38Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
PEX6_ASHGO1.765e-1153.97Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
CD48B_ARATH2.306e-1141.25Cell division control protein 48 homolog B OS=Arab... [more]
YJNA_SCHPO3.011e-1140.24Uncharacterized AAA domain-containing protein C24B... [more]
YHI5_SCHPO3.933e-1145.21Uncharacterized AAA domain-containing protein P22H... [more]
SPA5L_HUMAN3.933e-1145.57Spermatogenesis-associated protein 5-like protein ... [more]
PEX6_MOUSE3.933e-1155.56Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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