CN186082

Overview
NameCN186082
Unique NameCN186082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10238 contig Csv1_Contig10238:699..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 71/190 (37.37%), Postives = 101/190 (53.16%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISY---ICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREE--IRCMNPNYTDFR-FPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGA 558
            NLL+D     + + DFG AK    G  N +Y   + +R+YRAPEL+FGA  Y   +D+W+ GC+LAELLL  P  PG++ +DQL  I + LGTPT E+    C  P+Y  F+ FP I   P H +F      + +DL   L  ++P  R TA +A    +F     P       RP  P+   K++ + A
Sbjct:  142 NLLLDE-NGVLKLADFGLAKSF--GSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI---PLHHIF-SAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTPGCQLPRPNCPVETLKEQSNPA 324          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDK20_HUMAN (Cell division protein kinase 20 OS=Homo sapiens GN=CDK20 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 72/216 (33.33%), Postives = 114/216 (52.78%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANI--SYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTRE---EIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPEL---VNKLIPDHVKRQLGLNFLHP 630
            NLL+   + Q+ I DFG A+      + +    + +R+YRAPEL++GA +Y   +D+WS GC++ ELL G PLFPG+N ++QL  ++++LGTP  +   E+  + P+Y    F +    P  +V    + P+A+DL  + L Y P  R  A +A  H +F     P    P+  P+P      Q L G +P+       +   HV R L  + L+P
Sbjct:  132 NLLISA-SGQLKIADFGLARVFSPDGSRLYTHQVATRWYRAPELLYGARQYDQGVDLWSVGCIMGELLNGSPLFPGKNDIEQLCYVLRILGTPNPQVWPELTEL-PDYNKISFKEQVPMPLEEVL-PDVSPQALDLLGQFLLYPPHQRIAASKALLHQYF--FTAPLPAHPSELPIP------QRLGGPAPKAHPGPPHIHDFHVDRPLEESLLNP 336          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 56/161 (34.78%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISY-ICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMN--PNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDEL 480
            NLL+D  T+ + + DFG A+         ++ + + +YRAPE++ G+ +Y+T +D+WS GC+ AE++  +PLFPG++ +D+L +I +VLGTP  +    ++  P+Y    FP+ +A     +    + P  +DL S++L+Y P+ R TA +A  H +F +L
Sbjct:  132 NLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKS-AFPKWQAQDLATIV-PTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDL 290          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: MPK12_ARATH (Mitogen-activated protein kinase 12 OS=Arabidopsis thaliana GN=MPK12 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 67/202 (33.17%), Postives = 104/202 (51.49%), Query Frame = 1
Query:   31 HQVNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHK--RMPPEAIDLASRLLQYSPSLRCTALEACAH----PFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLI--------PDH 594
            +++ I DFG A+     +    Y+ +R+YRAPEL+   +EYT +IDIWS GC+L E++ GQPLFPG++ V QL  I +++G+P    +  +  +       Q+  +P  +   +  +MP  AIDL  R+L + P+ R +  EA  H    P  D  +EP    P        F+F  E    + E + +LI        PDH
Sbjct:  179 NELKIGDFGLARTTSDTDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTGQPLFPGKDYVHQLRLITELVGSPDNSSLGFLRSDNARRYVRQLPRYPKQQFAARFPKMPTTAIDLLERMLVFDPNRRISVDEALGHAYLSPHHDVAKEPVCSTP--------FSFDFEHPSCTEEHIKELIYKESVKFNPDH 372          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: ERK1_DICDI (Extracellular signal-regulated kinase 1 OS=Dictyostelium discoideum GN=erkA PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   37 VNICDFGSAKQLIAGEANI--SYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMP---PEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPN 492
            + ICD G A+   A        Y+ +R+YRAPE+I    +YT +IDIWS GC+ AELL  +PLF G++ + Q+  II+ +G+P+ E+I C   N    +F +   +     F    P   P+AIDL  R+L + PS R T  EA AHP+F  L +P+
Sbjct:  289 LKICDLGLARVEDATHQGFMTEYVATRWYRAPEVILSWNKYTKAIDIWSVGCIFAELLGRKPLFQGKDYIHQITLIIETIGSPSEEDI-CNIANEQARQFIRNMGNQPKVNFANMFPKANPDAIDLLERMLYFDPSKRLTVEEALAHPYFQSLHDPS 444          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 60/163 (36.81%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISY-ICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMN--PNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELRE 486
            NLL+D  T  + I D G ++         ++ I + +YRAPE++ GA  Y+T +DIWS GC+ AEL   QPLF G++ V QL+ I K+LGTP  +    ++  PN+ +  +PQ        + H  +  +A+DL  ++LQY PS R +A +A  HP+F+++ +
Sbjct:  164 NLLMDRKTMALKIADLGLSRSFTVPLKKYTHEILTLWYRAPEVLLGAAHYSTPVDIWSVGCIFAELATNQPLFAGDSEVQQLLHIFKLLGTPNEQVWPGVSKLPNWHE--YPQWNPSKVSDLVH-GLDADALDLLEKMLQYEPSKRISAKKAMEHPYFNDVNK 323          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: MPK4_ORYSJ (Mitogen-activated protein kinase 4 OS=Oryza sativa subsp. japonica GN=MPK4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 66/175 (37.71%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAK-QLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCM-NPNYTDF--RFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPL 519
            NLLV+     + ICDFG A+     G+    Y+ +R+YRAPEL+     Y TSID+WS GC+ AELL  +P+FPG   ++QL  I+ VLGT +  +I  + NP    +    P     P   ++  +  P AIDL  ++L + PS R +  EA  HP+   L +P+A  P   P+
Sbjct:  163 NLLVNA-NCDLKICDFGLARTNNTKGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIVNVLGTMSEADIEFIDNPKARKYIKTLPYTPGIPLTSMY-PQAHPLAIDLLQKMLVFDPSKRISVTEALEHPYMSPLYDPSANPPAQVPI 335          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: MPK1_ORYSJ (Mitogen-activated protein kinase 1 OS=Oryza sativa subsp. japonica GN=MPK1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 64/186 (34.41%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   37 VNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMP---PEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLI 585
            + ICDFG A+     +    Y+ +R+YRAPEL+  ++EYT +ID+WS GC+  EL+  +PLFPG + V QL  +++++GTP   ++  +N N   +   Q+  H   + F ++ P   P AIDL  ++L + P  R T   A AHP+   L + +       P    F+F  E    S E +  LI
Sbjct:  207 LKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNSSEYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPNEADLDFVNENARRY-IRQLPRHA-RQSFPEKFPHVHPLAIDLVEKMLTFDPRQRITVEGALAHPYLASLHDISDEPVCSSP----FSFDFEQHALSEEQMKDLI 386          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: HOG1_USTMA (Mitogen-activated protein kinase HOG1 OS=Ustilago maydis GN=HOG1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRF----PQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREP 489
            N+LV+     + ICDFG A+  I       Y+ +R+YRAPE++    +Y  ++D+WSAGC+ AE+L G+PLFPG++ V+Q   I ++LGTP  E I+ +    T  RF    P+ +  P+ + F K   P A+DL  ++L + P  R +A EA AHP+     +P
Sbjct:  146 NILVNE-NCDLKICDFGLAR--IQDPQMTGYVSTRYYRAPEIMLTWQKYDVAVDVWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDEVIKTICSENT-LRFVQSLPKRERVPFSQKF-KNADPMALDLLEKMLVFDPRTRISAAEALAHPYLAPYHDP 305          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: HOG1_MAGGR (Mitogen-activated protein kinase HOG1 OS=Magnaporthe grisea GN=HOG1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 69/171 (40.35%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRF----PQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAH----PFFDELREPNA 495
            N+LV+     + ICDFG A+  I       Y+ +R+YRAPE++    +Y   +DIWSAGC+ AE+L G+PLFPG++ V+Q   I ++LGTP  + I  +    T  RF    P+ +  P    F K   P AIDL  R+L + P  R TA EA AH    P+ D   EP A
Sbjct:  146 NILVNE-NCDLKICDFGLAR--IQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVINTIASENT-LRFVKSLPKRERQPLKNKF-KNADPSAIDLLERMLVFDPKKRITATEALAHEYLTPYHDPTDEPIA 311          
The following BLAST results are available for this feature:
BLAST of CN186082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK7_HUMAN5.502e-2437.37Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDK20_HUMAN5.502e-2433.33Cell division protein kinase 20 OS=Homo sapiens GN... [more]
CDKA1_ORYSJ9.386e-2434.78Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
MPK12_ARATH1.226e-2333.17Mitogen-activated protein kinase 12 OS=Arabidopsis... [more]
ERK1_DICDI1.226e-2339.49Extracellular signal-regulated kinase 1 OS=Dictyos... [more]
CKB21_ORYSJ1.226e-2336.81Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
MPK4_ORYSJ1.601e-2337.71Mitogen-activated protein kinase 4 OS=Oryza sativa... [more]
MPK1_ORYSJ1.601e-2334.41Mitogen-activated protein kinase 1 OS=Oryza sativa... [more]
HOG1_USTMA1.601e-2338.18Mitogen-activated protein kinase HOG1 OS=Ustilago ... [more]
HOG1_MAGGR1.601e-2340.35Mitogen-activated protein kinase HOG1 OS=Magnaport... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186082 ID=CN186082; Name=CN186082; organism=Citrus sinensis; type=EST; length=734bp
AGTGTAAACCTTTTGGTTGATCCTCTTACTCACCAGGTTAACATTTGTGA
TTTTGGAAGTGCAAAACAGCTGATTGCTGGAGAAGCAAACATATCATACA
TATGTTCACGTTTCTATCGGGCTCCAGAACTTATATTTGGAGCTACAGAA
TATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTGCTTGCCGAGCT
TCTTTTGGGCCAGCCATTATTTCCTGGAGAAAATGCAGTGGACCAGCTTG
TAGAGATTATCAAGGTTCTCGGTACACCCACTCGTGAAGAAATTCGCTGT
ATGAATCCAAATTATACCGATTTTAGGTTTCCACAGATTAAAGCACATCC
TTGGCACAAGGTTTTCCACAAACGGATGCCTCCTGAGGCTATTGATCTTG
CTTCACGCCTGTTGCAGTATTCACCAAGTCTCCGATGTACAGCGCTAGAA
GCATGTGCACATCCTTTCTTTGATGAACTGCGTGAGCCAAATGCTCGCCT
ACCAAATGGCCGCCCACTGCCACCTCTCTTCAACTTTAAACAGGAATTAT
CGGGGGCTTCACCAGAGCTTGTTAATAAGTTGATACCAGACCATGTGAAA
CGGCAATTAGGTCTGAATTTCTTGCATCCAGCCGGGACATAGGTCTAGAC
AAGTAATATAGAAGTGAAATCTACTTGGTGATGTGTAGCACAAAGGGAAT
TATATCCTTGTTCGTAACTGCCATGCATTGAGGC
back to top