CN186080

Overview
NameCN186080
Unique NameCN186080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig378 contig Csv1_Contig378:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_METM6 (Anthranilate phosphoribosyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.409e-29
Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = 2
Query:  185 LIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +++ +I R +L+  E+    + LLNE+ E  I+A+LV L+ KG T  EI G A+AM   A K++ LG+  D  GTGGDG+ T+N+ST  SI+ + C  KVAK             +V EALG  I   P+  ++ +++    F+ + KYHP +K + PVR +LKVKT+FNILGP
Sbjct:    1 MLNKIIERENLSFEESYELFNMLLNES-EMRIAAYLVALQTKGVTADEIAGFAKAMRDNAVKID-LGEVTDTCGTGGDGSKTINVSTAVSIILS-CFTKVAKHGNVSITSKSGSANVYEALGCKIPETPDDAKKSMEKTNFAFLFAPKYHPTLKKIMPVRNELKVKTIFNILGP 171          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_ANASK (Anthranilate phosphoribosyltransferase OS=Anaeromyxobacter sp. (strain K) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.409e-29
Identity = 76/167 (45.51%), Postives = 98/167 (58.68%), Query Frame = 2
Query:  212 DLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            DLT AEA + +  + +  A  A   AFL  LR KGET  EI G A  M + A +V    D  +D  GTGGDG +T NIST A+ +AA  G  VAK             DVL ALGV +D D E V RC++E GIGF+ + + HPA K +  VR++L V+T+FN+LGP
Sbjct:   14 DLTRAEAASVMTEIADGGATPAQSGAFLAALRMKGETVDEIAGAADVMRQRADRVRVDRDVFIDTCGTGGDGRHTFNISTTAAFVAAGAGVCVAKHGNRAVSSRSGSADVLAALGVNVDADKETVERCIEEVGIGFLFAVRLHPAFKAIAGVRRELGVRTIFNLLGP 180          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_ANAD2 (Anthranilate phosphoribosyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.409e-29
Identity = 77/172 (44.77%), Postives = 99/172 (57.56%), Query Frame = 2
Query:  197 LISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            L+   DLT AEA   +  + +  A  A   AFL  LR KGET  EI G A  M + A +V    D  +D  GTGGDG +T NIST A+ +AA  G  VAK             DVL ALGV +D D E V RC++E GIGF+ + + HPA K +  VR++L V+T+FN+LGP
Sbjct:    9 LLEGEDLTRAEAALVMTEIADGGATPAQSGAFLAALRMKGETVDEIAGAADVMRQRADRVRVDRDVFIDTCGTGGDGRHTFNISTTAAFVAAGAGVCVAKHGNRAVSSRSGSADVLAALGVNVDADKETVERCIEEVGIGFLFAVRLHPAFKAIAGVRRELGVRTIFNLLGP 180          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_MYCVP (Anthranilate phosphoribosyltransferase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 77/184 (41.85%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  167 TPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV--EGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            TP +  ++  L +   L   +   ++D ++   A  A I+AF V ++ K  T  E+  LA  M+K+A +V  + +G A VDIVGTGGDGANTVN+ST A+I+ AA G  V K             D LEALG+ IDL P+ V RCV E GIGF  + ++HP+ +    VR+++ V TVFN+LGP
Sbjct:   18 TPTWAMILGRLTTGQGLAPGQTAWAMDQIMTGTATPAQIAAFAVSMKMKRPTSAEVTELADIMLKHARRVPTDVIGTATVDIVGTGGDGANTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGLRIDLGPDEVARCVAEVGIGFAFAPQFHPSYRHAGAVRREIGVPTVFNLLGP 201          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_METLZ (Anthranilate phosphoribosyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 75/178 (42.13%), Postives = 100/178 (56.18%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E I  + S  DL+  EA+ ++ D +   A +  I AFL  L  KGET  EI   A  M + A ++  +  G  VD  GTGGDG NT NIST A+  AA  G  V K             DVLEALG+ ID+ PE V   +DE GIGFM +  +HPAMK+   VRK++ +++ FN++GP
Sbjct:    4 ECIKKVASHSDLSVYEAKGAMQDIMSGNATDGQIGAFLTALVMKGETSSEIAAFASVMRENAVQITPKRNGMLVDTCGTGGDGKNTFNISTAAAFTAAGAGVTVVKHGNRGATSKCGSADVLEALGIKIDISPERVCEIIDENGIGFMFAQSHHPAMKYAGKVRKEIGIRSFFNLIGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_ANADE (Anthranilate phosphoribosyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 77/172 (44.77%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  197 LISRVDLTEAEA-QASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            L+   DL+ AEA Q   +     A  A   AFL  LR KGET  EI G A  M + A +V    D  +D  GTGGDG +T NIST A+ +AA  G  VAK             DVL ALGV +D D E V RC++E GIGF+ + + HPA K +  VR++L V+T+FN+LGP
Sbjct:    9 LLEGEDLSRAEAAQVMTEIADGGATPAQSGAFLAALRMKGETVEEIAGAADVMRQRADRVRVSRDVFIDTCGTGGDGRHTFNISTTAAFVAAGAGVCVAKHGNRAVSSRSGSADVLAALGVNVDADKETVERCIEEVGIGFLFAVRLHPAFKAIAGVRRELGVRTIFNLLGP 180          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_PSEA6 (Anthranilate phosphoribosyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 66/150 (44.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  260 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            + D  ++S+ L  L+ KGET  EI G A AMI+ A+ V+    D  DIVGTGGDG NT+NIS+ A+I+AA+CG KVAK             D+  A G+ +D+ P   R C+D+A + F+ +  YH  +K   PVR  LK +T+FN+LGP
Sbjct:   31 QVDNIILSSLLTALKIKGETPEEIAGAATAMIQNASPVKRPEYDFADIVGTGGDGHNTINISSAAAIVAASCGVKVAKHGNRSVSSKSGSADLFNAFGMKLDMSPAAARECLDKANLCFLFAPVYHAGIKHAMPVRTTLKTRTIFNLLGP 180          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_NITOC (Anthranilate phosphoribosyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 70/170 (41.18%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  203 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +R +LT  E  + ++ +++ +A  A I   L+ LR KGET  EI   AR M + A KV   G   VD  GTGGDGANT NIST ++ + AA G +VAK             DVLEA G+ ++L PE + RC++E G+GF+ +  +H A+KF    R+++ ++T+FN+LGP
Sbjct:   12 TRRNLTSEEMTSVMNLIMSGQATPAQIGGLLIGLRMKGETVEEIAAAARVMRELATKVTVTGPHLVDTCGTGGDGANTFNISTASAFVVAAAGGRVAKHGNRSVSSQCGSADVLEAAGIKLELTPEQIARCIEELGVGFLFAPCHHSAIKFTIAPRREMGIRTLFNLLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_MYCGI (Anthranilate phosphoribosyltransferase OS=Mycobacterium gilvum (strain PYR-GCK) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 77/184 (41.85%), Postives = 107/184 (58.15%), Query Frame = 2
Query:  167 TPCFNELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV--EGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            TP +  ++  L +   L   +   ++D ++   A  A I+AF V ++ K  T  E+  LA  M+K+A  V  + +G   VDIVGTGGDGANTVN+ST ASI+ AA G  V K             D LEALG+ IDL P+ V RCV E GIGF  + ++HP+ +    VR+++ V TVFN+LGP
Sbjct:   18 TPTWAMILGRLTTGQSLLPGQTAWAMDQIMTGVATPAQIAAFAVSMKMKRPTSAEVTELAEIMLKHALPVPTDTIGTHTVDIVGTGGDGANTVNLSTMASIVVAAAGVPVVKHGNRAASSLSGGADTLEALGLRIDLGPDDVARCVAEVGIGFAFAPQFHPSYRHAGAVRREIGVPTVFNLLGP 201          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_MOOTA (Anthranilate phosphoribosyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = 2
Query:  188 IDCLISRVDLTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            I  +++   L+EAEA  ++D ++  EA  A I+AFL  LR KGE   EI G AR+M + A  +       VD  GTGGDG  T NIST A+ + A  G  VAK             D+LEALG+ +DL P+ V RC+DE G+ F+ +  +H AMK+    R+++ ++T FN+LGP
Sbjct:    6 ISKVVAGQHLSEAEAAEAMDIIMAGEATPAQIAAFLTALRLKGEMVDEITGFARSMRRRAIPLTTSHPVFVDTCGTGGDGRQTFNISTTAAFVVAGAGVAVAKHGNRSVSSRCGSADMLEALGIKVDLPPDAVARCLDEVGMAFLFAPVFHGAMKYAAGPRREIGIRTAFNLLGP 180          
The following BLAST results are available for this feature:
BLAST of CN186080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_METM61.409e-2941.38Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_ANASK1.409e-2945.51Anthranilate phosphoribosyltransferase OS=Anaeromy... [more]
TRPD_ANAD21.409e-2944.77Anthranilate phosphoribosyltransferase OS=Anaeromy... [more]
TRPD_MYCVP1.840e-2941.85Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_METLZ1.840e-2942.13Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_ANADE1.840e-2944.77Anthranilate phosphoribosyltransferase OS=Anaeromy... [more]
TRPD_PSEA62.403e-2944.00Anthranilate phosphoribosyltransferase OS=Pseudoal... [more]
TRPD_NITOC2.403e-2941.18Anthranilate phosphoribosyltransferase OS=Nitrosoc... [more]
TRPD_MYCGI2.403e-2941.85Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MOOTA2.403e-2941.14Anthranilate phosphoribosyltransferase OS=Moorella... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186080 ID=CN186080; Name=CN186080; organism=Citrus sinensis; type=EST; length=708bp
AGGGTTTCTTCCTCTCCATTTAATAATAATCACCCAAACCACCGGCCTTT
CTTACCGTCGCTTGGGAACTGTGGATTTACGACTGCGGGTAATAATCCGA
GATGCAGAGAATTAACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGAT
AGATACTCGTCCTCAAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGA
TAAGTCGAGTGGATTTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTAC
TTGTTGAATGAAGCTGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCT
CAGAGCCAAAGGAGAAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGA
TGATAAAGTATGCTGCGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATT
GTGGGTACAGGAGGTGATGGTGCAAACACAGTGAACATTTCAACTGGTGC
TTCAATTCTTGCCGCAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTC
GGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGT
GTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGC
AGGAATTGGTTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTG
TCAGGCCAGTGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTG
GGTCCTAT
back to top