CN186080

Overview
NameCN186080
Unique NameCN186080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig378 contig Csv1_Contig378:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SYNE7 (Anthranilate phosphoribosyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 2
Query:  170 PCFNE---LIDCLISRVDLTEAEAQASLD-YLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG---DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            P F E   L+  L++   L   +A+A ++ +L     EAL  A L  L++KG +  E+  +A+ + + A  VE        VD  GTGGDGA T NIST  + + AA G KVAK             DVLEALG+ +    + +   VDE GI F+ +  +HPAMK V P+RK L V+TVFN+LGP
Sbjct:    6 PAFAEAQVLLQRLLNHESLGAVQARALMEQWLSGTLPEALSGALLAALQSKGVSAQELAAMAQVLQEQAVAVEASDRREPLVDTCGTGGDGAETFNISTAVAFVTAAAGVKVAKHGNRSASGRVGSADVLEALGLNLTAPSDRIHAAVDEVGITFLFAPGWHPAMKAVAPLRKILGVRTVFNLLGP 191          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SILST (Anthranilate phosphoribosyltransferase OS=Silicibacter sp. (strain TM1040) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 66/165 (40.00%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  215 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            LT  EA+ +   L N EA  + +   L+ LR +GET  E    A  M     KV    DA+DIVGTGGDG  T+NIST  + + A  G  VAK             D L  +G+ + + P+ V + + EAGI FMM+  +HPA+  V P R++L  +T+FNILGP
Sbjct:   17 LTRTEAETAFAALFNGEATPSQMGGLLMALRTRGETVDEYAAAAAVMRAKCNKVSAPADAMDIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADALTEMGIQVMVGPKVVEKSLKEAGICFMMAPMHHPAIAHVMPTRQELGTRTIFNILGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_HAEPS (Anthranilate phosphoribosyltransferase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +L+  +I +  LT +E Q     ++  E +   ++A L+ L+ +GE+  EI G   A +  A        A  DIVGTGGD ANT+NIST ++I+ AACG K+AK             D+L ALGV I++  +  RR +DE G+ F+ + +YH   K   PVR+ LK +T+FNILGP
Sbjct:    5 QLLLKIIEQTHLTSSEMQQLFTSIIQGELNPIQLTALLITLKIRGESAEEISGAVAACLNAAQPFPTPDYAFADIVGTGGDSANTINISTASAIVGAACGLKIAKHGNRSVSSKTGSSDLLTALGVNINMPADIARRALDEIGLCFLFAQQYHLGFKHAVPVRQALKTRTIFNILGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_BACHK (Anthranilate phosphoribosyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 74/178 (41.57%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEAQASLDYLLNEAD-EALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEG-LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            N  +  L+    LTE E   +   LLNE   E+ I+AFLVLL+AKGET  EI GL RA+ + A      +  A+D  GTGGDGA T NIST ++ + A  G KVAK             D+LE LGV I   P  +   +   GI F+ +   HPA+K +  +RK+L V T+FN++GP
Sbjct:    2 NNYLRKLVEGQHLTEEEMYKAGLLLLNENILESEIAAFLVLLKAKGETAEEIYGLVRALREKALPFSNHIQGAMDNCGTGGDGAQTFNISTTSAFVLAGAGVKVAKHGNRAVSSKTGSADLLEELGVNISSTPNEIDYLLKHVGIAFLFAPAMHPALKRIMKIRKELNVPTIFNLIGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_BACC1 (Anthranilate phosphoribosyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 73/178 (41.01%), Postives = 100/178 (56.18%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEAQASLDYLLNEAD-EALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEG-LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            N  +  L+    LTE E   +   LLNE   E+ I+AFLVLL+AKGET  EI GL RA+ + A      +  A+D  GTGGDGA T NIST ++ + A  G KVAK             D+LE LGV I   P  +   ++  GI F+ +   HPA++ +  +RK+L V T+FN++GP
Sbjct:    2 NNYLRKLVEGQHLTEEEMYKAGLLLLNENILESEIAAFLVLLKAKGETAEEIYGLVRALREKALPFSNHIQGAMDNCGTGGDGAQTFNISTTSAFVLAGAGVKVAKHGNRAVSSKTGSADLLEELGVNISSTPNEIDYLLEHVGIAFLFAPAMHPALRRIMKIRKELNVPTIFNLIGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SULSY (Anthranilate phosphoribosyltransferase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 72/178 (40.45%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            ++I  L  R DLT+ E     D L+     +A I A L+ L+ KGE+  EI   AR M + A KV  +     VD  GTGGD  NT N+ST ++ + A  G KVAK             D++EALG+ I+L  E V R ++E G+GFM +  +HP+MK V   R+++ V+T+FNILGP
Sbjct:    4 DIIKKLTERQDLTKEEMTYLFDNLMEGNLTDAQIGAVLIGLKMKGESVLEIETAARIMKEKAVKVVVKDKSKLVDTCGTGGDRLNTFNVSTISAFVVAGAGGKVAKHGNRSISSKCGSADIMEALGIKIELTAEEVSRQIEEIGLGFMFAPLFHPSMKNVIKQRREIGVRTIFNILGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SHEDO (Anthranilate phosphoribosyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 2
Query:  152 DTRPQTPCFNELIDCLISRVDLTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAV-----DIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            D+   +     L+D L     LT ++++     ++  + D   ++  LV L+ +GET  EI G A A+   A       D++     DIVGTGGDG NT+NIST A+ +AAA GAKVAK             D+L   G+ + + P+    C+D  G+ F+ +  YH  ++   PVR+ LK +T+FNILGP
Sbjct:   11 DSNQASQASQALLDTLYQGHALTRSQSETLFASIVAGDMDPVAMAGMLVALKMRGETTAEITGAADALRSAAKPFPRSADSISTGVLDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRGVSSKSGSSDLLTHCGIGLTMSPKAASACLDTLGLSFLFAPHYHEGVRHAVPVRQALKTRTIFNILGP 201          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SERP5 (Anthranilate phosphoribosyltransferase OS=Serratia proteamaculans (strain 568) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 64/176 (36.36%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  185 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +++ L     + + E+Q     ++  E + + ++A L+ ++ +GE   EI G A+A++  A           DIVGTGGDG N++NIST ++ +AAACGAKVAK             D+L A G+ +DL  E  R+ +DE G+ F+ + +YH   +   PVR++LK +TVFN+LGP
Sbjct:    4 ILEKLYRSESMNQQESQQLFSAIVRGELEPSQLAAALISMKIRGEHPEEIAGAAKALLADALPFPRPDYPFADIVGTGGDGTNSINISTASAFVAAACGAKVAKHGNRSVSSRSGSSDLLAAFGIRLDLPAEEARKALDELGVCFLFAPQYHTGFRHAMPVRQQLKTRTVFNVLGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_NOCSJ (Anthranilate phosphoribosyltransferase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 70/176 (39.77%), Postives = 98/176 (55.68%), Query Frame = 2
Query:  182 ELIDCLISRVDLT-EAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E++  L++  DL+ +  A A  + L  EA  A I+ F + LRAKGET  E+ GL   M   A  +   G  +DIVGTGGD + +VNIST ++I+AA  GA+V K             DVLE+LG+ +DL    +     E GI F  +  +HPAM++    R++L V T FN LGP
Sbjct:    6 EVLGALVAGSDLSADQTAWAMGEILSGEATVAQIAGFAIALRAKGETVEEVSGLVDTMYALATPISVPGRLLDIVGTGGDRSMSVNISTMSAIVAAGAGARVVKHGNRSASSQSGSADVLESLGIRLDLPAARLAEIAAEVGITFCFAAAFHPAMRYAAVPRRELGVGTTFNFLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_HYPNA (Anthranilate phosphoribosyltransferase OS=Hyphomonas neptunium (strain ATCC 15444) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            N  I  +   + L E+  + + D LL+ EA    + AFL  L  +GET  E++  AR M ++   V   G  +D  GTGG    ++N ST ++I+ AA G +VAK             DVLEALG+ ++L     + C++ AG+GF+ +  YH AM+ V P+R KL ++T+FN+LGP
Sbjct:    7 NTAIQAIARGLPLEESVLEGAFDTLLSGEAAPEEVGAFLAGLTVRGETANELIAGARIMRRHGRSVSVEGPLLDTCGTGGLPWKSLNTSTASAIVIAAAGGRVAKHGNRSVPPKTGSADVLEALGLQLELSDTAFKSCLEIAGVGFLFARSYHSAMRHVAPIRHKLGIRTIFNLLGP 183          
The following BLAST results are available for this feature:
BLAST of CN186080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_SYNE73.248e-2639.78Anthranilate phosphoribosyltransferase OS=Synechoc... [more]
TRPD_SILST3.248e-2640.00Anthranilate phosphoribosyltransferase OS=Siliciba... [more]
TRPD_HAEPS3.248e-2638.98Anthranilate phosphoribosyltransferase OS=Haemophi... [more]
TRPD_BACHK3.248e-2641.57Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_BACC13.248e-2641.01Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_SULSY4.242e-2640.45Anthranilate phosphoribosyltransferase OS=Sulfurih... [more]
TRPD_SHEDO4.242e-2635.08Anthranilate phosphoribosyltransferase OS=Shewanel... [more]
TRPD_SERP54.242e-2636.36Anthranilate phosphoribosyltransferase OS=Serratia... [more]
TRPD_NOCSJ4.242e-2639.77Anthranilate phosphoribosyltransferase OS=Nocardio... [more]
TRPD_HYPNA4.242e-2636.72Anthranilate phosphoribosyltransferase OS=Hyphomon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186080 ID=CN186080; Name=CN186080; organism=Citrus sinensis; type=EST; length=708bp
AGGGTTTCTTCCTCTCCATTTAATAATAATCACCCAAACCACCGGCCTTT
CTTACCGTCGCTTGGGAACTGTGGATTTACGACTGCGGGTAATAATCCGA
GATGCAGAGAATTAACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGAT
AGATACTCGTCCTCAAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGA
TAAGTCGAGTGGATTTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTAC
TTGTTGAATGAAGCTGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCT
CAGAGCCAAAGGAGAAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGA
TGATAAAGTATGCTGCGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATT
GTGGGTACAGGAGGTGATGGTGCAAACACAGTGAACATTTCAACTGGTGC
TTCAATTCTTGCCGCAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTC
GGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGT
GTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGC
AGGAATTGGTTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTG
TCAGGCCAGTGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTG
GGTCCTAT
back to top