DC900139

Overview
NameDC900139
Unique NameDC900139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900139_ssr206 microsatellite DC900139_ssr206:206..217. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1971 contig Csv1_Contig1971:103..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS1_LEIME (Cyclin-dependent kinases regulatory subunit OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 196
            YS+KY+DD +EYRHV+LP D+A+L+P + L+SE EWR +GVQQS+GWVHY IH+PEPH++LF+RP
Sbjct:   33 YSDKYYDDMFEYRHVILPKDLARLVPTSRLMSEMEWRQLGVQQSQGWVHYMIHKPEPHVLLFKRP 97          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS2_MOUSE (Cyclin-dependent kinases regulatory subunit 2 OS=Mus musculus GN=Cks2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS+KYFD+ YEYRHV+LP +++K +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    8 YSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS2_HUMAN (Cyclin-dependent kinases regulatory subunit 2 OS=Homo sapiens GN=CKS2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS+KYFD+ YEYRHV+LP +++K +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    8 YSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS2_BOVIN (Cyclin-dependent kinases regulatory subunit 2 OS=Bos taurus GN=CKS2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS+KYFD+ YEYRHV+LP +++K +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    8 YSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS1_CAEBR (Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS KY DD YEYRHV +  DVAKL+PKN L+SETEWR++G+QQS GW+HY IH PE H++LFRRPL
Sbjct:   10 YSNKYEDDEYEYRHVHVTKDVAKLIPKNRLMSETEWRSLGIQQSPGWIHYMIHGPERHVLLFRRPL 75          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS2_XENLA (Cyclin-dependent kinases regulatory subunit 2 OS=Xenopus laevis GN=cks2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS+KY D+ +EYRHV+LP ++AK +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    8 YSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS1_CAEEL (Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis elegans GN=cks-1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS KY DD +EYRHV +  DV+KL+PKN L+SETEWR++G+QQS GW+HY IH PE H++LFRRPL
Sbjct:   10 YSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS1_DICDI (Cyclin-dependent kinases regulatory subunit OS=Dictyostelium discoideum GN=cks1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNCLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 196
            YS KY+DD YEYRHV+LP +++ L+P++ LL+E E R +G++QS GW HYA H+PEPHI+LFRRP
Sbjct:    7 YSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRP 71          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS1_YEAST (Cyclin-dependent kinases regulatory subunit OS=Saccharomyces cerevisiae GN=CKS1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNC---------LLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 199
            YS +Y DD YEYRHV+LP  + K++P +          +L+E EWR +G+ QS GW HY  H PEPHI+LF+RPL
Sbjct:   30 YSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPL 104          
BLAST of DC900139 vs. ExPASy Swiss-Prot
Match: CKS1_SCHPO (Cyclin-dependent kinases regulatory subunit OS=Schizosaccharomyces pombe GN=suc1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 2
Query:    2 YSEKYFDDTYEYRHVVLPPDVAKLLPKNC---------LLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRR 193
            YS +Y DD YEYRHV+LP  + K +P +          +L E EWR +G+ QS GW  Y +H PEPHI+LF+R
Sbjct:   27 YSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKR 99          
The following BLAST results are available for this feature:
BLAST of DC900139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CKS1_LEIME1.508e-2366.15Cyclin-dependent kinases regulatory subunit OS=Lei... [more]
CKS2_MOUSE3.360e-2369.70Cyclin-dependent kinases regulatory subunit 2 OS=M... [more]
CKS2_HUMAN3.360e-2369.70Cyclin-dependent kinases regulatory subunit 2 OS=H... [more]
CKS2_BOVIN3.360e-2369.70Cyclin-dependent kinases regulatory subunit 2 OS=B... [more]
CKS1_CAEBR7.486e-2369.70Cyclin-dependent kinases regulatory subunit OS=Cae... [more]
CKS2_XENLA2.845e-2268.18Cyclin-dependent kinases regulatory subunit 2 OS=X... [more]
CKS1_CAEEL8.277e-2266.67Cyclin-dependent kinases regulatory subunit OS=Cae... [more]
CKS1_DICDI1.195e-2061.54Cyclin-dependent kinases regulatory subunit OS=Dic... [more]
CKS1_YEAST1.047e-1650.67Cyclin-dependent kinases regulatory subunit OS=Sac... [more]
CKS1_SCHPO6.352e-1447.95Cyclin-dependent kinases regulatory subunit OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionDC900139 VSS Citrus sinensis cDNA clone VS27V59 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900139 ID=DC900139; Name=DC900139; organism=Citrus sinensis; type=EST; length=618bp
GTACTCGGAGAAATACTTCGATGACACTTACGAGTACAGACACGTGGTTC
TTCCTCCTGATGTGGCAAAATTGCTTCCCAAGAATTGTCTCCTTTCTGAA
ACTGAATGGCGTGCAATTGGAGTTCAGCAGAGCCGTGGATGGGTTCACTA
TGCCATTCATCGTCCTGAACCACACATTATGCTCTTCCGCAGGCCTCTGA
ATTATCAGCAGCAGCAGGAGAATCAAGCTCAGCAAAACATACTTGCCAAG
TGATTTCACGTCGCTCTTTATGTCAAAGAATGGAAGGAATAGGAAGTTTA
GTGTTTTACCTAAAAGGTTTAAATGTCGTAGGATGTTTGGTACTGCATTG
TATCTCTATAAATGCAGAATTCCATGTTAGGCTTCGTTTGGTGAATGGAT
GTGTTGTTGACATCTTTGATGTCTTTGTTGCTGCCTGTTTAGATATGTGA
TGTTGATACTTCTTGTGTACTGCTTGTGGATGAAAAGGCACCGGTGAATT
CTGAGTGATTAAGCTTTTAGTTGTCTTCTCACTTGTGCTTTGTCTTTGGT
TAATTTAACAGTTGAGATCACAGGTTTAAATCCTCTGNGTTTGGTTTTGG
TATAAAGGGAAATTCAAT
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