DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1492 contig Csv1_Contig1492:90..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_CHICK (Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_CAIMO (Histone H3.2 OS=Cairina moschata PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.436e-56
Identity = 113/132 (85.61%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 1.875e-56
Identity = 113/132 (85.61%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.875e-56
Identity = 113/132 (85.61%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_CHICK1.436e-5685.61Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2[more]
H32_CAIMO1.436e-5685.61Histone H3.2 OS=Cairina moschata PE=2 SV=2[more]
H32_BOVIN1.436e-5685.61Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H31_RAT1.436e-5685.61Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA1.436e-5685.61Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE1.436e-5685.61Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN1.436e-5685.61Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN1.436e-5685.61Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H33_VITVI1.875e-5685.61Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC1.875e-5685.61Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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