DC900118

Overview
NameDC900118
Unique NameDC900118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig906 contig Csv1_Contig906:56..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900118 vs. ExPASy Swiss-Prot
Match: 6PGL_HAEIN (6-phosphogluconolactonase OS=Haemophilus influenzae GN=pgl PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.427e-13
Identity = 61/214 (28.50%), Postives = 92/214 (42.99%), Query Frame = 3
Query:  267 VVLSGGSLIDSLRK-LVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFT-WFLDKDATSKL 902
            + LSGGS    L K L + PY + I W   H +W D+R+VP    +SNY          + I   N++ I          + +E  L  +  + +           FD ++LGMG DGH ASLFP H    ++E  +  I   P+    RI+ T  +I  +  I  +V G  K+  ++        +   P     A+   T W+LDK A   L
Sbjct:   32 ISLSGGSTPKLLFKTLAKSPYAEQINWKNLHFWWGDDRMVPPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFEEELSAVIPNGV-----------FDWIILGMGIDGHTASLFP-HQTNFDDEN-LAVIAKHPESGQIRISKTAKLIEQAKRITYLVTGESKADILKEIQTTPAENLPYPAAKIKAKNGVTEWYLDKAAVRLL 232          
BLAST of DC900118 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLMU (6-phosphogluconolactonase OS=Chlamydia muridarum GN=pgl PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.427e-13
Identity = 62/239 (25.94%), Postives = 103/239 (43.10%), Query Frame = 3
Query:  174 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ-MALAEEEFTWFLDKD 887
            + +S+ED            + K  +++G+F V LSGG     + + +        + +K  VFW DER        SNY  A D  L  + I    ++ + D  + +G  E YE  ++      I           FD+++LG+G DGH  SLFPG   L+E ++ V F  + P+    R+T TFP++  + ++   + G  K       L +    D  P++ +        W L  D
Sbjct:   15 IAESQEDFLQIACYDWISTANKAIQKRGAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIFVFWGDERASEDTEAGSNYLKAMD-ILKWLRIPDTQIFRM-DTANPKGD-EIYENLIREHVPDTI-----------FDMVMLGVGEDGHTLSLFPGTAALEEKDRLVVF-NEVPQLQTRRMTLTFPIVRQARHLVAYIQGTAKQDLCHKLL-HPLGRDTFPIERVGTPLNPLQWVLSSD 237          
BLAST of DC900118 vs. ExPASy Swiss-Prot
Match: 6PGL_BORBU (6-phosphogluconolactonase OS=Borrelia burgdorferi GN=pgl PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.901e-12
Identity = 54/205 (26.34%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  246 KEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVP----ITTGNVYA-INDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQM 845
            K+K +   +  G S+++ L   ++     +  + + H F VDER VP + ++SNY L    F S++     I+    +A +   +    A  DY   ++  ++ NI           FD +++ +G DGHIASLFP   LL  + +   +  +SPK P +RI+ T   +  S  + ++  G  K  A++  L +N + +  P ++
Sbjct:   26 KDKYTSIGICGGRSIVNFLSVFLK----QNFSFRRSHFFLVDERCVPLNDENSNYNLLNKNFFSKMVDKNLISISKFHAFVYSEIDEATAIHDYN--IEFNSRFNI-----------FDFIIVSVGEDGHIASLFPSRKLLFSDVEGYQYEYNSPKFPSKRISLTPKSLFGSKAVVLLFMGVDKKCALENFLASNSSINECPARL 213          
BLAST of DC900118 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLTR (6-phosphogluconolactonase OS=Chlamydia trachomatis GN=pgl PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.463e-12
Identity = 64/243 (26.34%), Postives = 103/243 (42.39%), Query Frame = 3
Query:  174 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ-MALAEEEFTWFLDKDATSK 899
            + DS+E+            + K   ++G+F V LSGG     + + +        + +K  VFW DER        SNY  A D  L  + I    ++ + D    +G  E YE  ++      I           FD+++LG+G DGH  SLFP    L+E E++V F  + P+    R+T TFP++  + ++   V G  K       L +    D  P++ +        W L  D+  K
Sbjct:   15 IADSQEEFLQIACYDWISTANKAIHKRGAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIVVFWGDERANEDVEAGSNYLKAMD-ILKGLRIPEDQIFRM-DTADPKGD-EAYEALIQKYVPDAI-----------FDMVMLGVGEDGHTLSLFPETHALEEKERFVVF-NEVPQLHTRRMTLTFPIVRQARHLVAYVQGENKQDLFH-KLVHPLGRDTFPIERVGTPLNPVQWVLSSDSCRK 241          
BLAST of DC900118 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLPN (6-phosphogluconolactonase OS=Chlamydia pneumoniae GN=pgl PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.440e-11
Identity = 56/200 (28.00%), Postives = 93/200 (46.50%), Query Frame = 3
Query:  246 KEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTA-LGNNQNSDLLPVQ 842
            K++G+F V LSGG     + K +       I+ +K  +FW DER+ P    +SNY  A    L  + I    ++ + +  + +GA +  E     L ++ I   S       FD+++LG+G DGH  SLF     L+E    V F    P    ER+T TFP ++   ++ + V G  K   +++      +   L P++
Sbjct:   39 KQRGAFYVALSGGKTPLEIYKDIVINKDKLIDPSKIFLFWGDERLAPITSSESNYGQAMS-ILRDLNIPDEQIFRM-ETENPDGAKKYQE-----LIENKIPDAS-------FDMIMLGLGEDGHTLSLFSNTSALEEENDLVVF-NSVPHLETERMTLTFPCVHKGKHVVVYVQGENKKPILKSVFFSEGREEKLYPIE 223          
BLAST of DC900118 vs. ExPASy Swiss-Prot
Match: 6PGL_HELPY (6-phosphogluconolactonase OS=Helicobacter pylori GN=pgl PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.456e-11
Identity = 56/209 (26.79%), Postives = 92/209 (44.02%), Query Frame = 3
Query:  246 KEKGSFTVVLSGG-SLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFT 869
            K+    ++  SGG S I  L+KL     V +++W +  +  VDER++   HDDSN KL +D  L    +    +  + + +S++               +N L   A   F +  L +LGMG DGH ASLFP        EK    +      P ER++ +   + +   + + + G  K   ++ AL  N     LP+   L  ++ T
Sbjct:   31 KKHHQISIAFSGGRSPISLLQKLS----VLNLKWHECLISLVDERIIDTSHDDSNTKLLHDYLLQNNALKASFIPLLPEKISSD---------------TNALFNFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLTKPINAPYERLSMSVNALENCEKLFLSISGVEKRGVLEKALKENAPYS-LPIARILHSQKVT 219          
The following BLAST results are available for this feature:
BLAST of DC900118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
6PGL_HAEIN3.427e-1328.506-phosphogluconolactonase OS=Haemophilus influenza... [more]
6PGL_CHLMU3.427e-1325.946-phosphogluconolactonase OS=Chlamydia muridarum G... [more]
6PGL_BORBU2.901e-1226.346-phosphogluconolactonase OS=Borrelia burgdorferi ... [more]
6PGL_CHLTR6.463e-1226.346-phosphogluconolactonase OS=Chlamydia trachomatis... [more]
6PGL_CHLPN1.440e-1128.006-phosphogluconolactonase OS=Chlamydia pneumoniae ... [more]
6PGL_HELPY2.456e-1126.796-phosphogluconolactonase OS=Helicobacter pylori G... [more]

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Properties
Property NameValue
Genbank descriptionDC900118 VSS Citrus sinensis cDNA clone VS27V33 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900118 ID=DC900118; Name=DC900118; organism=Citrus sinensis; type=EST; length=1051bp
CTCGTGCCGCATTCGGCACGAGTCAGTTTCAGTTTCAGTTACTCAGAAGA
CCAAACTCACTCCTCCAATTTCGAAACATTTCCCTTGATCGGAACAAATC
ATCGGACTGCGTGAGAATCAAGGCATCATCATCAATGGCTGCCGAGAATA
ANANCAAGAACAAGAACGTACAAGTTTTTGACTCAGAGGAAGATCTGGCT
GTGTCTTTGGCCAAATACACCGCCGATCTATCTGCCAAGTTCGGTAAAGA
GAAGGGCTCCTTCACTGTCGTCTTATCCGGTGGTTCTCTCATCGACTCCC
TCAGGAAATTAGTGGAACCCCCGTATGTAGATTCAATTGAATGGGCGAAA
TGGCATGTGTTTTGGGTTGATGAAAGAGTTGTTCCCAAGGATCATGATGA
TAGCAATTATAAGCTTGCTTATGATGGTTTCCTTTCTCAGGTACCAATTA
CCACTGGCAATGTCTATGCCATCAATGATGCATTATCTGCTGAAGGTGCA
GCTGAAGATTACGAGACTTGTCTCAAGCATTTGACAAAGAGCAATATATT
AGCTACATCTGCTGCTACTGGTTTTCCAAAGTTTGATCTCATGCTTCTGG
GTATGGGTCCAGATGGACATATAGCTTCTCTGTTTCCAGGGCATCCTCTT
CTCAAGGAGAATGAGAAATGGGTTACTTTCATTAAAGACTCGCCAAAGCC
ACCTCCAGAGAGAATCACTTTCACCTTCCCTGTAATCAACTCATCTGCAT
ATATTGCAATGGTGGTGTGTGGTGCTGGAAAATCAAGTGCAGTTCAAACT
GCATTGGGTAATAATCAAAACTCTGATTTGCTGCCAGTTCAAATGGCATT
GGCTGAAGAAGAATTCACTTGGTTTCTTGACAAAGACGCNACTTCAAAGC
TGTAAGAGTCAGAACAATTTGCTGTATGCATGAATCCCTGTTATCTGCTA
TGATAATTGGTTTGATCTGTGTGGTTTGACTACTAGTACTGCTGGATTTT
GTTAGTAATGAGAACAGAGTGAACTTGTTAATGGAAGTGAAAAAGATTTA
A
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