DC900117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21 Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 389 R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ + D E +ITP GGFPHYG+V D+L+I+G G KR++ +R ++ + +E ++ ++ SK Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE------NGKLVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-20 Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 389 R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ + + E DITP GGFPHYG++ D+L+I+G G KR++ +R ++ + +E ++ ++ SK Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE------NGKLVLNGNEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20 Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 389 R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ + + ++ E +ITP GGFPHYG++ D+L+I+G G KR++ +R ++ + +E ++ +I SK Sbjct: 233 RHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGE-----NGKLKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.706e-18 Identity = 52/121 (42.98%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R V IG W P+R +TVA+AGQ GYH RTE NKKI K+ A + I P GGF YG+V DY+L+KG GP KR+V LRQ + + +I +I T SK G Sbjct: 229 RHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPIRPNNKSEDMPQI--NYISTKSKQG 335
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.617e-18 Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 3 Query: 30 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LR+V +GA++P+RVS+ V + GQ GYH RTE NK+I K+G +E +TP GGF +YG+V DY+LIKG GP KR++ LR + + + L E + +I SK G Sbjct: 232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.029e-18 Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R V IG W P V ++V GQ GYH RTE NK+I K+G E ITP GGF HYGV+ +Y+++KG GP KR++ LR+++ Q + + EI +I T+SK G Sbjct: 230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.029e-18 Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R IG W P R+ +TV AGQ G+H RTE NK+I K+G+ E I P GGF +YGVV +Y+L+KG GP KR+V LR+++ + L E L ++ T SK G+ Sbjct: 228 RHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.343e-17 Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 30 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LR V +G WHPAR+S+ V + GQ GYH RTE NK+I +G DITP GGF YGVV +Y+LIKG GP KR+V +R++ ++ + A + ++ ++ SK G Sbjct: 228 LRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG--------------TNGTDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17 Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R V +G W+P R+ + V + GQ GYH RTE NK+I K+G ++E ITP GGF HYG++ DY+++KG GP KR+V +R ++ + + + ++ ++ T SK G Sbjct: 233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17 Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R + +G W P+R +TV +AGQ GYH RTE NK+I K+G AS+ + P GGF YG+V DY++IKG GP KR+V LR+++ + + E ++ +I T+SK G Sbjct: 230 RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADL------------VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336 The following BLAST results are available for this feature:
BLAST of DC900117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900117 ID=DC900117; Name=DC900117; organism=Citrus sinensis; type=EST; length=641bpback to top |