DC900117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15 Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 12 RKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 323 RKT R R + IG P+RV +TV AGQ GYH RTE NK+I K+G+ +E +TP GGF +YGVV DY++I G GPKKR++ +R ++ Sbjct: 227 RKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 30 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LR++ +G + RVS+ V + GQ GYH RTE NK+I K+G +E +TP GGF +YG+V DY+LIKG GP KR++ LR + + + L E + I SK G Sbjct: 232 LRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15 Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 3 Query: 12 RKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 323 RK RG +K + +G WHP V + V + GQ GY RTE NK+I K+G E ITP GGF HYG+V Y+LIKG GP KR+V +R ++ Sbjct: 224 RKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI 315
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.777e-15 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 12 RKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 RK RG +K + +G W+P V + V + GQ GY RT+ NK+I K+G+ DITP GGF HYG++ Y++IKG GP KR++ +R ++ K + I +F+ T SK G Sbjct: 224 RKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENGT--------------DITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVPAI--EFVSTQSKQG 337
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14 Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 3 Query: 6 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTE--KDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LPRK + R + +G WHP V TV +AGQ G+H RT N +I K FD + DI GGF +YG+V DY+L+ G GP KR++ +R + +R A+E I++ ++ SK G Sbjct: 213 LPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14 Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 3 Query: 6 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LPRK + R + +G WHP V TV +AGQ GY RT N ++ K K I GGF HYG+V DY+L+ G GP KR++ +R ++ ++ +KL +I SK G Sbjct: 215 LPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKGEDAD------------TINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14 Identity = 50/130 (38.46%), Postives = 65/130 (50.00%), Query Frame = 3 Query: 12 RKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 RK RG R V +G W P V + V GQ GYH RTE NK++ K+G+ E ITP GGF +YG V Y+LIKG GP KR+V +R ++ + + E + FI SK G Sbjct: 224 RKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14 Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 3 Query: 6 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LPRK + R + +G WHP V TV +AGQ G+ RT N ++ K G + I GGF HYG V DY+L+ G G KR++ +R ++ +EE+KL++I SK G Sbjct: 215 LPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGNKEEVD------------SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.097e-14 Identity = 47/105 (44.76%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 6 LPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 314 LPR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G+ E ITP GFPHYGVV Y+LI+G G +KR+V LR Sbjct: 224 LPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.044e-14 Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R V +G W+P V + V ++GQ GY RTE NK+I K+G+ E ITP GGF +YGV+ Y++IKG GP KR++ +R ++ + + ++F+ SK G Sbjct: 233 RHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337 The following BLAST results are available for this feature:
BLAST of DC900117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900117 ID=DC900117; Name=DC900117; organism=Citrus sinensis; type=EST; length=641bpback to top |