DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_CANFA (Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.651e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+ AEF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_DUGDU (Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.157e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+ +EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  ++
Sbjct:    3 AFSRAVFSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAAIL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_DASNO (Aquaporin-2 (Fragment) OS=Dasypus novemcinctus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.157e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA++AEF+ATL+F++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  ++
Sbjct:    3 AFSRAVLAEFLATLIFVFFGLGSALSWPQALPS-----VLQIALAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_AMBHO (Aquaporin-2 (Fragment) OS=Amblysomus hottentotus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.157e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+ +EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYVAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP9_MOUSE (Aquaporin-9 OS=Mus musculus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.817e-11
Identity = 64/239 (26.78%), Postives = 107/239 (44.77%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV--------KAFMKHEYNSLG-GGANTVASGYNKG--SALGA---EIIGTFVLVYTVFSATDPKRSARDSHVP-VLAPLPIGFAVFMVHLATIPITGTGINPAR-----------SFGAAVIYNNDKAWDDHWIFWVGPFVGAL 845
            ++EF+ T + + +   ++       +  GG+  + I +A    + + +Y T G+SGGHINPAV+F +    ++   +   Y+ AQ LGA  G   V         AF   +    G  G   + + Y K   S  GA   +++ T  L+  VF+  D    +R+  VP  L P+ IG  + ++  +    +G  +NPAR            +G  V    +  W   WI  VGP +GA+
Sbjct:   27 LSEFLGTFIMIVLGCGSIAQAVLSREKAGGIITINIGFATA--VVMALYATFGVSGGHINPAVSFAMCTFGRMEWFKFPFYVGAQLLGAFVGAATVFGIYYDGLMAFADGKLLITGENGTAFIFATYPKPFVSVPGAFVDQVVSTMFLLLIVFAIFD----SRNLGVPRGLEPIVIGLLIIVISCSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFTFGNNFW---WIPVVGPMIGAV 256          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_RABIT (Aquaporin-2 (Fragment) OS=Oryctolagus cuniculus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.679e-11
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+ AEF+ATLLF++  + + +       +      L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFAEFLATLLFVFFGLGSALNWPSALPST-----LQIAMAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_ERIEU (Aquaporin-2 (Fragment) OS=Erinaceus europaeus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.679e-11
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+  EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   +S +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFTEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQMLGHISGAHINPAVTVACLVGCHISFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP_ENCIN (Aquaporin OS=Encephalitozoon intestinalis GN=AQP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.275e-11
Identity = 57/245 (23.27%), Postives = 100/245 (40.82%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALG-----AEIIGTFVLVYTVFSA----------TDPKRSARDSHVPV----LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            +++  E VA+ +F +   + ++G      +   V ++G+   F G+  +  +C   I+  H NPA+T    L  K+ +++ + YM+AQ +G +  V  +      EY       +T+  G     A       AE   T + V+ VF+           T+ K    D   PV     APL IG  +  +    +  +G   NP  +F    + N    W   WI+  G ++G L        +L
Sbjct:   10 QSMFGEMVASFVFGFAVYSAILGSSISQSSADKV-IVGLTVGFSGIGVIYSFCDVTIA--HFNPAITLAAILTSKIDVLQGLGYMLAQYIGFMLAVCALLVCSPVEYKET---LDTIRPGPTDFGATSLNVFFAEFFLTAIFVHIVFATAVNPYKPKVDTEGKFVDPDEKEPVDRRITAPLCIGLTLGFLAFMGLASSGGAFNPGLTFAPMAMSN---TWSHFWIYLGGQYLGGLTGGLLQVLVL 245          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_ORYAF (Aquaporin-2 (Fragment) OS=Orycteropus afer GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.275e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F +A+ +EF+ATLLF++  + + +   +   +      L IA AFG  I  LV     ISG HINPAVT    +   VS +RA+ Y+ AQ LGA+ G  L+
Sbjct:    3 AFSKAVFSEFLATLLFVFFGLGSALNWPQALPSG-----LQIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRAIFYVAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQP2_CANFA1.651e-1140.20Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2... [more]
AQP2_DUGDU2.157e-1139.22Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=... [more]
AQP2_DASNO2.157e-1138.24Aquaporin-2 (Fragment) OS=Dasypus novemcinctus GN=... [more]
AQP2_AMBHO2.157e-1140.20Aquaporin-2 (Fragment) OS=Amblysomus hottentotus G... [more]
AQP9_MOUSE2.817e-1126.78Aquaporin-9 OS=Mus musculus GN=Aqp9 PE=2 SV=1[more]
AQP2_RABIT3.679e-1140.20Aquaporin-2 (Fragment) OS=Oryctolagus cuniculus GN... [more]
AQP2_ERIEU3.679e-1139.22Aquaporin-2 (Fragment) OS=Erinaceus europaeus GN=A... [more]
AQP_ENCIN6.275e-1123.27Aquaporin OS=Encephalitozoon intestinalis GN=AQP P... [more]
AQP2_ORYAF6.275e-1139.22Aquaporin-2 (Fragment) OS=Orycteropus afer GN=AQP2... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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