DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.232e-35
Identity = 92/230 (40.00%), Postives = 133/230 (57.83%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            +F +A+ AEF+ATL+F++  + + +   K   A   V  L I+ AFG  I  +      +SGGH+NPA+T  L +  ++SL+RAV Y+VAQ +GAI G  ++     +   S     N + +    G A+ AE+I TF L   VFS+TD +R++     PV +P L IG +V + HL  I  TG  +NPARSFG AVI +   +   HW+FWVGP VGA  AA  + Y+L
Sbjct:    9 AFLKAVFAEFLATLIFVFFGLGSAL---KWPSAMPSV--LQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARS-NLAVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSS--AHWVFWVGPIVGAATAAIIYFYLL 225          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.813e-34
Identity = 91/237 (38.40%), Postives = 134/237 (56.54%), Query Frame = 3
Query:  168 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY-NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            M EL+  SF+RA++AEF+ +LL+  + +   +       A G  G+LG A AFG     LV     +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA+ G G++          +LG  A   + G  +G+ +  E++ T   +  VF++ D +   R    P  A LP+GF++ + HL  IP TG G+NPARSF  AVI  N   + +HW+FW GP +GA  AA  ++  L
Sbjct:    1 MRELRSSSFWRAILAEFLGSLLYTLLGLGASLRW-----APGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVGPGQGTVV--ELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRN---FTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.813e-34
Identity = 89/231 (38.53%), Postives = 133/231 (57.58%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            +F +A+ AEF+ATL+F++  + + +             +L IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RA  Y+ AQ +GAI G G++  +     N+ G    N + +   +G A+  E+I TF L   +F++TD +R++     PV +P L IG +V + HL  I  TG  +NPARSFG AV+ N  +    HW+FWVGP VGA+ AA  + Y+L
Sbjct:    9 AFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL--YGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN--RFSPAHWVFWVGPIVGAVLAAILYFYLL 225          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.039e-34
Identity = 89/231 (38.53%), Postives = 133/231 (57.58%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG---GANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            +A +AEF++TL+F++    + +   K +D  A    GL+  + A    +FV V   A ISGGH+NPAVTFG F+   +SL++A+ Y VAQ LG++    L+K        + GG   GA ++++G    +A+  E++ TF LVYTV+ +A DPK+      + V+AP+ IGF V    LA     G  +NPA SFG AV+      W++HW++WVGP  GA  AA  +  I
Sbjct:   21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKI-------ATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWENHWVYWVGPLAGAAIAALVYDII 237          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 4.039e-34
Identity = 84/231 (36.36%), Postives = 125/231 (54.11%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILR 878
            + +R L+AEF+ T   + + + +  G    S       L  IA+ FG ++  L      +SG HINPAVT GL +   VS+++   Y+V+QC+GAI G  ++KA    E   +GG G   +A G + G  +  E + TF+LV+ V    D +R    + V   APL IG ++   HLA I  TG  +NPARSFG AV+  N   + D W++WVGP VG + A A ++   +
Sbjct:   21 NIWRMLVAEFLGTFFLVAIGIGSTTGWTDYSPT-----LTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEV--VGGLGVTGIAPGLSTGQGVLIEALITFMLVFVVHGVCDNRR----TDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGN---YTDLWVYWVGPIVGGIVAGAVYRLFFK 237          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.276e-34
Identity = 90/240 (37.50%), Postives = 131/240 (54.58%), Query Frame = 3
Query:  168 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN--SLGG--GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            M EL+  +F RA++AEF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RAV Y+ AQ LGA+ G  L+     HE    ++ G    N + +    G A+  E+  T  LV  +F +TD +R  +  H      L IGF+V + HL  I  TG  +NPARS   A++      +DDHW+FW+GP VGA+ A+  + Y+L
Sbjct:    1 MWELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL-----HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH----PALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.175e-33
Identity = 91/234 (38.89%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAYHQYILRAAA 887
            +A +AEF+ATLLF++  V + I + K +   A    GL+ +A A    +FV V   A +SGGH+NPAVT GL +   ++++  + Y +AQCLG+     L    +K   N L    + VA+G +    +  EII TF LVYTV+ +A DPK+ +    + V+AP+ IGF V    LA  P +G  +NPARSFG AV   +   +  +WI+W GP + GALA   Y    + A A
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLL----LKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIYGDVFITAHA 241          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.535e-33
Identity = 91/225 (40.44%), Postives = 128/225 (56.89%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 860
            RA +AEF++TLLF++  V + I + K +   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL +  ++++I  V Y +AQ LG+     L    +K+    L    ++VA+G      +  EII TF LVYTV+ +A DPK+ +    +  +APL IG  V    LA  P +G  +NPARSFG AV   +   +  HW++WVGP + G LA   Y
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFL----LKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.005e-33
Identity = 88/236 (37.29%), Postives = 133/236 (56.36%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQ---------SDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            RA +AEF++T +F++ +  +++   K          ++  GG+ L+ +A AF   +F  V     +SGGH+NPAVTFG  +  +V+ IRA+ Y +AQ LGAI    L    ++   N +      +ASG    + L  EII TF LVY V+S   DPKR +    + ++APL IG  V    L   P +G  +NPAR+FG A++      W DHWI+WVGPF+G+  AA  ++Y++
Sbjct:   24 RATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAI----LACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV---GWRWHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.618e-33
Identity = 88/236 (37.29%), Postives = 129/236 (54.66%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIG-HKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 899
            RA I+EF+AT +F++ +  +V+   K   D     GL+ +A A    + V V     ISGGH+NPAVTFG  +  +VSL+RAV Y VAQ LGA+    L++         +      +ASG     A+  E + TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++      W  HW++W+GPF+GA  A   ++Y++  +A  A+
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRL----ATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAV 250          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQP5_SHEEP6.232e-3540.00Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
MIP_CHICK1.813e-3438.40Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP5_HUMAN1.813e-3438.53Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
TIP12_MAIZE4.039e-3438.53Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
AQP_ANOGA4.039e-3436.36Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP2_SHEEP5.276e-3437.50Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
TIP_ANTMA1.175e-3338.89Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_ARATH1.535e-3340.44Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP31_ARATH2.005e-3337.29Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP31_MAIZE2.618e-3337.29Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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