DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.876e-31
Identity = 89/225 (39.56%), Postives = 127/225 (56.44%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 860
            +A ++EF+ATLLF++  V + +   K +   A    GL+ +A A    +FV V   A ISGGH+NPAVT GL +   +++I    Y +AQCLG+I    L+  F+    N      + VA+G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+  +   +   WI+WVGP V GALA   Y
Sbjct:   19 KAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVAC-LLLVFVT---NGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.451e-31
Identity = 84/232 (36.21%), Postives = 126/232 (54.31%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIG-HKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAA 887
            RA I+EF+AT +F++ +  +++   K   D     GL+ ++ A    + V V     ISGGH+NPA+TFG  L  ++SLIRA+ Y +AQ LGA+    L++         +      +ASG     A+  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++      W  HW++W+GPFVGA  A   ++Y++  +A
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRL----TTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLVIPSA 247          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.459e-31
Identity = 80/236 (33.90%), Postives = 122/236 (51.69%), Query Frame = 3
Query:  168 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            M E + +SF+RA+ AEF  T+ +++  +   +       A G   +L IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+ Y+ AQ LGA+ G  ++               NT+  G + G A   EI  T   V  +F+  D +R+ R   V     L IGF++ + HL  +  TG  +NPARSF  AV+  N   + +HW++WVGP +G       + +IL
Sbjct:    1 MWEFRSFSFWRAVFAEFFGTMFYVFFGLGASLKW-----AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRG-NLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRN---FTNHWVYWVGPIIGGALGGLVYDFIL 223          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.459e-31
Identity = 81/236 (34.32%), Postives = 126/236 (53.39%), Query Frame = 3
Query:  168 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            M EL+  SF+RA+ AEF ATL +++  +   +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA+ G  ++ +             NT+ +G +   A   EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++  N   + +HW++WVGP +G    +  + ++L
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.130e-31
Identity = 80/236 (33.90%), Postives = 126/236 (53.39%), Query Frame = 3
Query:  168 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            M EL+  SF+RA+ AEF ATL +++  + + +       A G + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA+ G  ++ +             NT+    + G A   EI  T   V  +F+  D +R+ +   V     L +GF++ + HL  +  TG G+NPARSF  A++  N   + +HW++WVGP +G    +  + ++L
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGSSLRW-----APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.312e-31
Identity = 89/225 (39.56%), Postives = 126/225 (56.00%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVI--GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 860
            +A +AEF+ATLLF++  V + I  G      A    GL+ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  + Y +AQ LGA     L+K F+ H       G     +G ++   +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   N   +  +W++WVGP + G LA   Y
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLK-FVTHGKAIPTHG----VAGISELEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLIGGGLAGLVY 231          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 9.312e-31
Identity = 85/232 (36.64%), Postives = 126/232 (54.31%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKG----SALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            RA +AEF++TL+F++    + I   K +D  A    GL+  A A    +FV V   A ISGGH+NPAVTFG+ L   ++L+R + Y +AQ LG++    L+        +   GG    A G + G    +AL  EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA +FG AV+      W +HW++W GP +G   A   + ++
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL--------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLIGGGLAGIIYDFV 238          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.216e-30
Identity = 91/226 (40.27%), Postives = 127/226 (56.19%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVI--GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVA-SGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 860
            +A +AEF+ATLLF++  V + I  G      A    GL+ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  V Y VAQ LGA     L+  F+ H     G    T A +G ++   +  E++ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   +   +  +W++WVGP V G LA   Y
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVAC-LLLGFVTH-----GKAIPTHAVAGISELEGVVFEVVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.216e-30
Identity = 84/231 (36.36%), Postives = 126/231 (54.55%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG---GANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            RA  AEF + ++F++    + + + K +        GL+  + +    +FV V   A +SGGH+NPAVTFG F+   ++L+RA+ Y +AQ LGA+    L+K        S GG    A +++ G    +A+  EI+ TF LVYTV+ +A DPK+      + ++APL IG  V    L      G  +NPA SFG AV+      W +HW++WVGPF+GA  AA  +  I
Sbjct:   21 RAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKV-------STGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.709e-30
Identity = 83/227 (36.56%), Postives = 122/227 (53.74%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQY 869
            RA +AEF +T +F++    + +   K  Q  A     LL +A A    +F  V  +  +SGGH+NPAV+FG  +  ++S+IRAV Y +AQ LG+I    +++       N++      V+ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA +FG +++      W  HWIFWVGP +GA  AA  ++Y
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVT----NNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAALVYEY 236          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
TIP22_ARATH1.876e-3139.56Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP31_ORYSJ2.451e-3136.21Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
MIP_RANPI5.459e-3133.90Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_CAVPO5.459e-3134.32Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_HUMAN7.130e-3133.90Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP21_ORYSJ9.312e-3139.56Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH9.312e-3136.64Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP21_MAIZE1.216e-3040.27Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP13_ARATH1.216e-3036.36Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIPA_PHAVU2.709e-3036.56Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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